Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02300 ATGAGACCCAATATAGTCACCGAGGCAGGGGTGCCTACTAGGTTGAGTCAATGGTGGGAAAGCATTCCATTTCTCACTTCAGCAGTGGTGGTTGTTTGTGGAATAATTTACTTGGTCTGTCTATTGGTTGGATATGACTCCTTCGATGAGATATGCTTCTCGGCTTCTGCTGTTATATCACGGTTCCAAGTTTACAGGATTTATACCTCCATTCTTTTTCACGGTTCATTGCTTCATGTTCTCTTCAACATGATGGCTTTAGTTCCAATGGGCTCTGAACTGGAGAGGATCATGGGCTCAGTTCGATTGCTATATGTCATCATACTGTTGGCTACAAGCAATGCTATATTTCATGTTCTCATAGCGTTGCTGGTGGCATATAATCCTTTTAAGCCGTATGAATACCTCGTGAATGAATGTGCAATAGGCTTCTCTGGAGTTCTATTTTCAATGATTGTTATTGAAACAAGCTTGAGTGGAGCTCAATCCAGAAGTGTATTTGGACTGTTTAATGTGCCTGCAAAGTGGTACCCATTCATTTTGTTGGTAGTGTTCCAGCTTCTCATGTCCAATATATCCTTTCTCGGACACCTTTGTGGGATTTTGTCTGGGTTTGCATATACATACGGATTGTTCAATTTCCTCATACCTGGAACATCTTTTTATTCTGCCGTTGAGGCCTCCTCATGGCTTTCATCATGTGTGAGACGGCCTAAATTCATTGTTTGCACCGGTGGGAATTCTTCTGGCTACATCCCCACAAGTCAAAATTCAACATCCAGTGGATTGCTTTCTGGAAACTTTTGGAGAAGCCTTTCATCAATGATGCCACAAAGAGAAGTATCTGCTCAGCCAACGCAGGATAGTAGGTTCCCTGGGAGGGGGAGGACCCTTGTTTCTGGTATGGGTCAAGCGGCTTCTGCTGTTCCTTCAGATTCAAATCTTCAAGCTAGGCTGCTGGAGAACAGCAGTCCCAGTCATCCTTTAGACTCGACAACCCTTAACAATTCTCAACAGTTACCAGAAGGAAGGCAGTCAACTGTAAATAATGCAGCAACAGCAGCTACGGTTGTTCCCCAGCATCAGGGTTCAGTTGTTTCTGatgaagagataaaaaaactCGTAGCAATGGGCTTTGATAAGACACAGGTCGAAGTGGCACTGGCAGCAGCTGATGGAGATCTTAACGTGGCAGTGGAAATACTCATGAGCCAACAGGGTTA 1223 0.4366 MRPNIVTEAGVPTRLSQWWESIPFLTSAVVVVCGIIYLVCLLVGYDSFDEICFSASAVISRFQVYRIYTSILFHGSLLHVLFNMMALVPMGSELERIMGSVRLLYVIILLATSNAIFHVLIALLVAYNPFKPYEYLVNECAIGFSGVLFSMIVIETSLSGAQSRSVFGLFNVPAKWYPFILLVVFQLLMSNISFLGHLCGILSGFAYTYGLFNFLIPGTSFYSAVEASSWLSSCVRRPKFIVCTGGNSSGYIPTSQNSTSSGLLSGNFWRSLSSMMPQREVSAQPTQDSRFPGRGRTLVSGMGQAASAVPSDSNLQARLLENSSPSHPLDSTTLNNSQQLPEGRQSTVNNAATAATVVPQHQGSVVSDEEIKKLVAMGFDKTQVEVALAAADGDLNVAVEILMSQQG 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02300 407 PANTHER RHOMBOID-LIKE PROTEIN 15 4 406 - -
Bva04g02300 407 SMART uba_6 367 404 IPR015940 -
Bva04g02300 407 MobiDBLite consensus disorder prediction 321 344 - -
Bva04g02300 407 SUPERFAMILY Rhomboid-like 20 214 IPR035952 -
Bva04g02300 407 Gene3D - 16 213 IPR035952 -
Bva04g02300 407 Pfam Rhomboid family 60 213 IPR022764 GO:0004252|GO:0016021
Bva04g02300 407 Pfam UBA/TS-N domain 368 402 IPR015940 -
Bva04g02300 407 Gene3D - 337 407 - -
Bva04g02300 407 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 366 405 IPR015940 -
Bva04g02300 407 SMART DUF1751_2 55 157 - -
Bva04g02300 407 SUPERFAMILY UBA-like 360 406 IPR009060 GO:0005515
Bva04g02300 407 CDD UBA_At3g58460_like 369 403 - -
Bva04g02300 407 PANTHER DER1-LIKE PROTEIN, DERLIN 4 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02300 Bva-Chr4 21626127 21630979 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02300 - - gmx:100798661 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02300 04 21626127 21630979 Bva04g02300 04 21626127 21630979 ECH