LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva04g02270	ATGGAAGACGAAGAAGACCAGCAGAAGGCTGCATATCTAGTCAAAGAACTGGTGCTTCGTTTGCTGTCTACAAGTCAAGCTTCCGATTCACGACCCACGAACCCTAACTCGCCCGATTTTCAAAAGTCTCTTCGCTATGCAATTCGCATTCTTTCCAGTAGATTGACACCCTCGATAGCTCTCGATGTTGCCGCCATTGCCGAGTCTGTCAAGCGCCGCCTCGCCACTCAAGGTAGTTCCGCTGAGGCCCTTACGTTTGCCGACCTTTACACCAAATTCGCTTCGAAGACTGGTCCGGGTGGTGTAAATAACAAATGGGCACTTATTTACATGCTTAAAATCATCTCCGAAGATCGGAAAAGCACTCAAATGGATACTGGGGTTTCGTTGCCCTATTTGGTTTTTGCTAACGGTGAGTCTAAGGATTCTAGAATTCTGCATAGCCGTAATGTCCAGGATAAGGGATGGAATAATGGGGTTTTGTTGGTTGCCAAGGATCCTGACAATCGTCGTGATATTGCTTTTAGGGAGTTTGtaaatttggttaaagaagaaaatgaagtctCTGAAGAGGTTTTGGTTAGGGATGTCTTGTATGCCTGTCAAGGAGTTGACGGGAAGTATGTGAAATTTGATAATAGGGTAGGTGGTTACGTTTTATCAGATTTGGTTAAGGTCCCTAGAGCTACTAGGTCTATGGTTCACAAGCTTTGTGAACTAGGGTGGTTGTTTAAAAAGGTTACAGGGTACATATCTGAAAGCATGGATCGATTTCCAGCAGAGAACGTGGGAACTGTAGGACAAGCCTTTTGTGCTGCATTGCAAGATGAGCTCTCTGAGTACTATAAGCTGTTGGCAGTGCTTGAAGCACTGTCGTCAAATTCTATTCCATTGGTATCAGAATCAGCAAGTTTGGCAAATTATCTTTCACTAAGGAGACTAGCCGTTTGGCTTGCGGAGCCAATGGTCAAAATGAGGTTAATGGCGGATTTGGTTGATAAGTGTAGGGTTTTGAGAGGCGGGGCAATGGCTGGTGCAATTCATTTGCATGGTCAACAAGGTGACCCACTTGTTCATGAATTCATGATGAAATTACTGCAGCGAGTATGTTCTCCGCTTTTTGAAATGGTTAGAAGATGGGTTCTGGAAGGGGAGTTAGAAGACATCTTTGCTGAATTCTTTATTGTGAGTCAGCAGGTGAAAGCTGAATCCCTTTGGAGAGAAGGCTATAAGCTCCGTGCTACGATGCTTCCTTCTTTTATTCCACCTTCTCTTGCTCAGCGTATCTTAAGGACTGGTAAGTCCATAAATTTTCTACGAGTCTGTTGCGAAGATCGTGGTTGGGCCGATGCTGCAACTGAAGCTGCCACTGCTACAGGGAACACAGCAAGAAGAGGTGGTTTTGGTTATGGTGAAACTGATGCGCTTGAGTCCTTGGTTGATGAAGCTGCAAGAAGAATTGATAAACATTTATTGGATGTAATGTATAAAAGGTACAAATTCAAAGAACACTGTCTTGCAATTAAGCGATATTTACTGCTTGGTCAAGGGGATTTTGTTCAATATCTAATGGATATTGTTGGACCTGACCTTTCTGAGCCTGCTAGCACTATAAGCTCTTTTAAACTTGCTGGTTTATTGGAAAGTGCAATTCGGTCATCCAATGCACAGTATGATGATCCTGACATACTGCATCGGCTAAGGGTCAAGATTATACCACATGAAAGTGGTGACGGGGGCTGGGATGTATTTTCTCTAGAATATGATGCACTAGTTCCACTAGATACTGTGTTCACAGAGTATGTGATGGCTaagtatttgaaaatttttaattttttgtggaaACTTAAAAGAGTAGAGCATGCACTCATTGGTGCCTGGAAGACCATGAAACCAAATTGCATTACTTCTAATTCCTTTACCAAGTTGCCGCACGCAGTTAAGTTGCAGTTAGTTTCCATATTGAGGGGCTGCCAGGTTGTTTGGGTTGAAATGAATCACTTTATTTCAAACTTGCAGTATTATATAATGTTTGAAGTCTTGGAGGTGTCATGGTCGAACTTTTTAGATGAGATGGAGATAGCCAAGGACCTTGATGACCTGCTTAGAGCACATGAGAAATATCTACATTCCATTGTAGAGAAATCTCTCCTTGGAGATTGTTCCCAGTCTCTTTACAAGTGGCTAGTTGTAGTATTTGATCTAATATTGCGATTTCGGAGTCATGCTGATCGGTTGTATGAAGGAATTCATGAATTGCAAACAAGAATTATGGAATCCTCCTTATCCTCTCGAGACcagaaaaaaacacaaaagcaGTTGAATGACAGGTCAGCGGATCATGGATCCTGGATTGCTGGTGGCAGGAAAGCCCTAACACAAGGTGCTGGCGAATTCCTTCAAAGCATGGGACAAGATCTGGATGTGATTGCTAAGGAGTATTCTTCATTGCAAGAGGAGTTCATTTCTCAGTTGCCTGTACAACAACATGTTGATCTCAAGTTCCTCTTTTTCCGTCTTGACTTCAATGAATTTTATAGGCGTGTCCCTTGCATATA	2558	0.4179	MEDEEDQQKAAYLVKELVLRLLSTSQASDSRPTNPNSPDFQKSLRYAIRILSSRLTPSIALDVAAIAESVKRRLATQGSSAEALTFADLYTKFASKTGPGGVNNKWALIYMLKIISEDRKSTQMDTGVSLPYLVFANGESKDSRILHSRNVQDKGWNNGVLLVAKDPDNRRDIAFREFVNLVKEENEVSEEVLVRDVLYACQGVDGKYVKFDNRVGGYVLSDLVKVPRATRSMVHKLCELGWLFKKVTGYISESMDRFPAENVGTVGQAFCAALQDELSEYYKLLAVLEALSSNSIPLVSESASLANYLSLRRLAVWLAEPMVKMRLMADLVDKCRVLRGGAMAGAIHLHGQQGDPLVHEFMMKLLQRVCSPLFEMVRRWVLEGELEDIFAEFFIVSQQVKAESLWREGYKLRATMLPSFIPPSLAQRILRTGKSINFLRVCCEDRGWADAATEAATATGNTARRGGFGYGETDALESLVDEAARRIDKHLLDVMYKRYKFKEHCLAIKRYLLLGQGDFVQYLMDIVGPDLSEPASTISSFKLAGLLESAIRSSNAQYDDPDILHRLRVKIIPHESGDGGWDVFSLEYDALVPLDTVFTEYVMAKYLKIFNFLWKLKRVEHALIGAWKTMKPNCITSNSFTKLPHAVKLQLVSILRGCQVVWVEMNHFISNLQYYIMFEVLEVSWSNFLDEMEIAKDLDDLLRAHEKYLHSIVEKSLLGDCSQSLYKWLVVVFDLILRFRSHADRLYEGIHELQTRIMESSLSSRDQKKTQKQLNDRSADHGSWIAGGRKALTQGAGEFLQSMGQDLDVIAKEYSSLQEEFISQLPVQQHVDLKFLFFRLDFNEFYRRVPCI	852

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva04g02270	852	PANTHER	GAMMA TUBULIN COMPLEX PROTEIN	32	841	IPR007259	GO:0000226\|GO:0000922\|GO:0005815\|GO:0007020\|GO:0043015
	Bva04g02270	852	Pfam	Gamma tubulin complex component N-terminal	194	497	IPR041470	-
	Bva04g02270	852	Coils	Coil	271	291	-	-
	Bva04g02270	852	Gene3D	-	502	845	IPR042241	-
	Bva04g02270	852	MobiDBLite	consensus disorder prediction	761	782	-	-
	Bva04g02270	852	MobiDBLite	consensus disorder prediction	762	776	-	-
	Bva04g02270	852	Pfam	Gamma tubulin complex component C-terminal	503	846	IPR040457	GO:0043015
	Bva04g02270	852	PANTHER	GAMMA-TUBULIN COMPLEX COMPONENT	32	841	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva04g02270	Bva-Chr4	21478541	21482736	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva04g02270	K16570		-	qsu:112038362	1318.91