Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02127 ATGGATACTTTGCTCAAAACACCTAACAAGCTTGAATATTTGCATCCGCTTCACGGTTATTCTGAAAAATTGAGTACCTTAAGCTCTTCTAGGTTGCAAAATCAGGAGTTTAGATTTGGTcccaaaaaatcaaatttgaaatggGGTAGAAGTGGTTGTTTGAGGGTTAGTAGCAATGCTCTTTTGGAGCTTGTTCCagaaatgaagaaggagaaTCTGGATTTTGAACTTCCTCTTTATGATTCTTCAAAAGGCGTTGTGGTGGACCTTGCAGTTGTGGGAGGAGGCCCTGCAGGGCTTGCAGTTGCACAGCAAGTTTCTGAGGCAGGGCTTTCAGTATGTGCAATTGACCCGAACCCCAGATTAATTTGGCCCAATAACTACGGTGTTTGGGTAGATGAATTTGAAGATTTGGATTTACTTGATTGCCTTGATACTACTTGGTCTGGTGCTGTTGTTTACATTGATGAACAAACAAAGAAGGATCTAGGTAGACCTTATGGTAGGGTCAATAGAAAGCAGCTGAAGTCCAAGATGCTGCAGAAATGTATATTAAACGGTGTCAAGTTTCACCAAGCTAAAGTTATCAAGGTTATTCATGAGGAATCCAAATCTATGCTATTATGTAATGATGGTGTCACTGTTCAAGCTGCTGTAGTTCTTGATGCAACTGGCTTTTCAAGATGCCTTGTTCAGTATGATAAACCATATAACCCAGGTTACCAAGTGGCTTATGGCATTTTAGCTGAGGTTGATGAACACCCATTTGATGTAGATAAAATGGTTTTTATGGACTGGAGAGACTCACATCTGCATGATAACAAGGAgctgaaagagagaaatagtAGAATTCCCACTTTTCTGTATGCAATGCCCTTTTCATCAACGAGGATATTTCTTGAAGAAACTTCTTTAGTTGCTCGACCTGGTTTACGCATGGATGATATTCAGGAAAGAATGGTAGCTAGACTGAAACACTTGGGCATTAAAGTGAAAAGCATTGAAGAAGATGAGCATTGTGTCATTCCCATGGGTGGCCCTCTCCCTGTTCTTCCACAAAGAGTTGTTGGAATTGGTGGTACTGCTGGGATGGTGCATCCTTCAACTGGGTATATGGTAGCGAGGACCCTTGCTGCAGCTCCAATTGTTGCTAGTTCCATTGTTCAGTGCCTTGATTCTGGTAAAAGCGTTTCAGGAATTGAACTGTCTACACAAGTGTGGAAAGATTTATGGCCCATCCAGAGGAGGAGACAGAGAGAATTCTTCTGTTTCGGTATGGATATCTTACTCAAGCTTGATTTGCCAGCCACAAGGAGATTTTTTGATGCATTTTTTGATCTAGAACCTCATCATTGGCACGGATTCTTATCATCAAGACTGTTTCTTCCTGAGCTCATATTTTTTGGGCTCGCTCTATTCTCTCACGCTTCTAATACATCTAGGTTAGAGATCATGACAAAGGGAACTTTTCCTTTAGTAAACATGATCAACAACTTAATACAAGATAGAGATTG 1514 0.3943 MDTLLKTPNKLEYLHPLHGYSEKLSTLSSSRLQNQEFRFGPKKSNLKWGRSGCLRVSSNALLELVPEMKKENLDFELPLYDSSKGVVVDLAVVGGGPAGLAVAQQVSEAGLSVCAIDPNPRLIWPNNYGVWVDEFEDLDLLDCLDTTWSGAVVYIDEQTKKDLGRPYGRVNRKQLKSKMLQKCILNGVKFHQAKVIKVIHEESKSMLLCNDGVTVQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVDEHPFDVDKMVFMDWRDSHLHDNKELKERNSRIPTFLYAMPFSSTRIFLEETSLVARPGLRMDDIQERMVARLKHLGIKVKSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVASSIVQCLDSGKSVSGIELSTQVWKDLWPIQRRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPHHWHGFLSSRLFLPELIFFGLALFSHASNTSRLEIMTKGTFPLVNMINNLIQDRD 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02127 504 PANTHER UBIQUINONE BIOSYNTHESIS MONOOXYGENASE COQ6, MITOCHONDRIAL 6 504 - -
Bva04g02127 504 Gene3D - 86 425 IPR036188 -
Bva04g02127 504 TIGRFAM carotene-cycl: lycopene cyclase family protein 89 484 IPR010108 GO:0016117|GO:0016705
Bva04g02127 504 SUPERFAMILY FAD/NAD(P)-binding domain 88 470 IPR036188 -
Bva04g02127 504 Pfam Lycopene cyclase protein 89 481 - -
Bva04g02127 504 PANTHER LYCOPENE BETA CYCLASE, CHLOROPLASTIC 6 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02127 Bva-Chr4 20692643 20694854 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02127 K06443 - gmx:100810895 866.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02127 04 20692643 20694854 Bva04g02127 04 20692643 20694854 ECH