Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02107 ATGTCGCTACACTCGGTGTCTCCCATTTCTCAGCTCCTCCACATCAATGCCCGCTCCGCCGCAGAGCCGTTTCCTTCCCTTCTTGCCTCCTCCAACTGTCAGTTACTCGTTGACTTCACCGGTTTGTACTGCAAGTCCAAGCGAGGTAAGCGTAGATTGAGAGCGTTTGGCTCTCGCAGAGGCTTTCAGCATCACGTCATCAGGACTTCTTCCTCGGTCAAAGCTGTTCATGAACTTGAGCGTTGCAGTAAGGGTCTCAATGATTCAGCTCCTTCTTCTGATTTGCAACCACAGGTTGCAAACTTGGAGGACATAATTTCAGAAAGAGGAGCTTGTGGTGTTGGATTTATTGCCAATCTGGAAAATAAACCATCACATCAGATTGTCAAGGATGCTCTTAATGCTCTAGGCTGTATGGAACATCGTGGTGGTTGTGGAGCAGATAATGATTCTGGTGATGGTTCAGGGTTGATGACTTCAATTCCATGGGATTTATTTGACAATTGGGCCAACAAACAAGGAATTGCTTCCTTTGATAAGTTACATACTGGTGTTGGAATGGTTTTTCTACCCAAAAATGATTTACTTCTGAATGAGGCCAAGAATGTTATTGTAAATACCTTTAGACAAGAAGGTCTTGACGTGCTTGGCTGGAGGCCTGTCCCTGCAAATAGTTCTGTAGTAGGTTATTATGCAAAAAATACCATGCCCAACATACAGCAGGTATTTGTTAAGATTGCTAAAGAAGAGGATGTTGATGACATTGAACGAGAGCTTTACATCTGCcgaaaattgattgaaaaagCAGTTAGCTCAGAGAGTTGGGGAAATGAGCTTTATATCTGTTCTTTGTCCAATCGAACAATTGTTTACAAAGGAATGCTTCGATCAGAAGTTCTTGGGTTATTTTACTCTGACCTTCAGAATGATCTTTATAGGTCCCCATTTGCCATTTATCATCGAAGGTATAGCACAAATACTAGTCCCAGATGGCCTCTTGCACAACCAATGAGGCTTCTTGGTCATAATGGAGAAATCAATACTATACAGGGGAACTTGAATTGGATGCAATCTCGAGAGACCTCATTGAAGTCTCCCGTATGGCGTGGTCGTGAAAATGAAATTCGTCCTTTTGGAAATCCAAAGGCATCAGATTCAGCAAATCTTGACAGTGCTGCTGAACTACTCATAAGGAGCGGTCGCAGTCCTGAGGAAGCTATGATGATTCTTGTTCCAGAGGCttacaaaaatcatccaactctGACGATCAAATACCCTGagGCAGTTGACTTCTATAACTACTACAAGGGTCAGATGGAGGCTTGGGATGGACCAGCCTTGCTTCTATTCAGTGATGGAAAAACTGTTGGTGCATGTCTTGATCGTAATGGACTTCGGCCTGCTAGGTATTGGCGAACATCAGATAATTTTGTCTATGTTGCCTCTGAGgtTGGTGTTGTTCCTGTGGATGAGTCAAAGGTTACCATGAAAGGCCGATTAGGTCCTGGGATGATGATAACAGTTGATTTACTTGGTGGTCAGGTATATGAGAATACAGAGGTTAAAAAGCGAGTGGCCTTATCAAATCCATATGGGAAGTGGGTCATGGAAAATATGCGACTTTTGAAGCCTGCAAACTTCCTTTCAGCAGCTATCATGGACAACGATGAAATATTGAGACACCAACAGGCATTTGGGTACTCCAGTGAAGATGTCCAAATGGTGATAGAGACTATGGCTGCTCAAGGAAAGGAACCAACATTTTGCATGGGAGACGATAttccattggcagcattgtCTCAAAAGCCTCACGtgctttatgattattttaagcAACGGTTTGCACAGGTTACAAACCCTGCTATTGACCCTCTCCGAGAAGGACTGGTTATGTCTCTTGAAGTCAATCTAGGGAAGCGAGGGAATATATTGGAAGTTGGACCTGAGAATGCTTCACAGGTTACATTGTCTAGTCCAGTGCTGAATGAAGAGGAGCTTGAGTCAATACTAAAAGATCCCTACTTAAGACCACAAAGATTACCGGCATTTTTTGATGTAACTAAGGGGATTGATGGTTCTTTGGAGAAGGCATTAGATAAGCTCTGTGAAGCTGCTGATGAAGCTGTTAGAAATGGTTCCCAGCTGCTAATTCTCTCTGACCGTTCAGATGCCCTGGAACCAACTCATCCAGCACTTCCAATACTTCTTGCTGTTGGTGCTGTTCATCAACACCTAATTCAGAATGGCCTGCGGATGTCAGCTTCAATTGTAGTAGAAACTGCTCAATGCTTCAGCACTCATCAGTTTGCCTGTTTGATAGGATATGGTGCAAGCGCTGTGTGTCCATACCTGGCACTGGAGACATGTCGGCAATGGCGTTTGAGTAATAAAACTGTAAATCTGATGAAGAATGGAAAGATGCCTACTGTATCAATTGAACAAGCCCAGAAGAACTACAGCAAGGCTGTTAAAGCAGGCCTTCTTAAAATTCTTTCCAAAATGGGTATCTCATTGCTTTCAAGTTACTGTGGTGCACAGATATTTGAAGTCTATGGTCTAGGGAAGGAAGTTGTTGATCTTGCATTCAGAGGAAGTGTATCAAAAATTGGTGGACTAACTTTTGATGAGCTGGCCAGGGAGACTTTGTCTTTCTGGGTGAAGGCATTCTCTGAAGATACAGCTAAAAGActagaaaattttggatttataCAGTTCAGACCCGGAGGGGAATATCATGCAAATAATCCAGAGATGTCAAAATTGCTACATAAAGCTGTTCGCCAAAAAAGTCAAAGTGCCTTTTCAGTTTATCAGCAGCATTTGGCTAATCGACCTGTGAATGTTCTCCGTGATCTTCTTGAATTCAAAAGTGACTGTGCCCCAATACCAGTGGGAAAGGTAGAACCTGCCTCATCTATTGTACAACGGTTTTGCACTGGTGGGATGTCACTTGGAGCTATTTCAAGAGAAACTCACGAAGCAATTGCAATTGCAATGAACAGATTAGGAGGAAAATCCAATTCAGGAGAAGGTGGTGAGGATCCTATTCGCTGGAAACCACTTTCGGATGTTGTTGATGGTTACTCTCCAACTCTTCCGCATCTAAAAGGCCTTCAAAATGGTGACACTGCTACTAGTGCTATCAAGCAGGTTGCTTCTGGAAGGTTTGGGGTCACCCCAACGTTCTTGGCTAATGCTGATCaattagaaatcaaaattgCACAAGGTGCAAAGCCTGGTGAAGGTGGACAATTGCCTGGGAAAAAAGTTAGCATGTATATTGCAAGGTTGAGAAATTCTAAACCAGGTGTTCCTCTTATATCTCCACCTCCTCATCATGACATTTACTCTATTGAGGATCTTGCTCAATTGATCTTTGATCTTCATCAGGTGAACCCTAAGGCTAAGGTGTCGGTAAAGCTGGTGGCTGAAGCTGGAATCGGCACTGTTGCATCTGGGGTTGCTAAGGGTAATGCCGACATTATACAGATTTCAGGGCATGATGGTGGAACAGGAGCGAGCCCTATAAGTTCTATCAAGCACGCGGGAGGTCCGTGGGAACTTGGGCTTACAGAAACTCACCAGaCGCTCATTGAAAATGGACTGAGGGAAAGGGTCATTCTAAGAGTTGATGGTGGCTTTAGAAGTGGAGTTGATGTCATGATGGCTGCTGCAATGGGTGCTGATGAGTATGGGTTTGGTTCAGTGGCAATGATTGCTACTGGATGTGTAATGGCCCGTATTTGCCACACCAACAATTGCCCTGTTGGTGTTGCCAGTCAGAGGGAAGAGTTGCGTGCACGTTTTCCCGGTGTTCCTGGTGATCTTGTCAACTACTTTTTATATGTTGCTGAGGAGGTCAGAGGTATGTTGGCACAGCTAGGGTATGAGAAGTTGGATGATATAATTGGTCGGACGGAGTTGTTGCATCTGCGAGATATATCTCTAGCAAAAACTCGGCATTTAGATCTGAGTTATATTCTCTCAAGTGTTGGGTTACCGAAAGGGAGCAGTACAGAAATCCGGAATCAGGATGCTCATACCAATGGTCCCGTTCTGGATGATGTTTTGCTGGCAGACCCAGAGATTGCAGATGCCATTGAGAATGAAAAAGTGGTCCATAAGACCACAAAAATATACAACATTGATCGTGCTGTGTGTGGGCGTATAGCTGGCGTCATTGCAAAGAAGTATGGTGACACTGGTTTTGCTGGACAGTTGAACATAACATTTACTGGAAGTGCTGGGCAGTCATTTGCATGCTTTTTGACACCTGGAATGAACATTCGCCTGGTAGGGGAGGCCAATGATTATGTGGGGAAGGGCATTGCTGGAGGTGAGTTGGTTGTCACTCCAGTTGATGAGATAGGGTTTCAACCTGAGGATGCAGCTATTGTGGGGAACACTTGCTTATACGGGGCAACAGGTGGGCAGGTCTTTGTTAGGGGGAAAGCTGGGGAGCGATTTGCTGTGAGAAACTCACTTACTGAAGCTGTGGTTGAAGGCACTGGAGACCATTGTTGTGAGTACATGACTGGGGGTTGTGTGGTTGTCCTTGGAAAGGTGGGTAGAAATGTAGCCGCTGGAATGACTGGAGGCTTGGCTTACATTCTTGATGAGGACAATACGCTCATACCCAAGGTAAACCGGGAAATTGTAAAAATCCAACGGGTGTCAGCGCCTGTGGGTCAGATGCAACTGAAGAGCCTTATTGAAGCCCATGTTCAAAAAACTGGGAGTAACAAAGGTGCAGCTATTCTGAAGGAGTGGGATAAGTATTTACCACTATTCTGGCAGTTAGTTCCTCCTAGTGAAGAAGACACTCCAGAGGCTAATGCCAAGTATGACACAACTGCTACGGAGCAAGTCACTTTGCAGTCTGCTTA 4886 0.4363 MSLHSVSPISQLLHINARSAAEPFPSLLASSNCQLLVDFTGLYCKSKRGKRRLRAFGSRRGFQHHVIRTSSSVKAVHELERCSKGLNDSAPSSDLQPQVANLEDIISERGACGVGFIANLENKPSHQIVKDALNALGCMEHRGGCGADNDSGDGSGLMTSIPWDLFDNWANKQGIASFDKLHTGVGMVFLPKNDLLLNEAKNVIVNTFRQEGLDVLGWRPVPANSSVVGYYAKNTMPNIQQVFVKIAKEEDVDDIERELYICRKLIEKAVSSESWGNELYICSLSNRTIVYKGMLRSEVLGLFYSDLQNDLYRSPFAIYHRRYSTNTSPRWPLAQPMRLLGHNGEINTIQGNLNWMQSRETSLKSPVWRGRENEIRPFGNPKASDSANLDSAAELLIRSGRSPEEAMMILVPEAYKNHPTLTIKYPEAVDFYNYYKGQMEAWDGPALLLFSDGKTVGACLDRNGLRPARYWRTSDNFVYVASEVGVVPVDESKVTMKGRLGPGMMITVDLLGGQVYENTEVKKRVALSNPYGKWVMENMRLLKPANFLSAAIMDNDEILRHQQAFGYSSEDVQMVIETMAAQGKEPTFCMGDDIPLAALSQKPHVLYDYFKQRFAQVTNPAIDPLREGLVMSLEVNLGKRGNILEVGPENASQVTLSSPVLNEEELESILKDPYLRPQRLPAFFDVTKGIDGSLEKALDKLCEAADEAVRNGSQLLILSDRSDALEPTHPALPILLAVGAVHQHLIQNGLRMSASIVVETAQCFSTHQFACLIGYGASAVCPYLALETCRQWRLSNKTVNLMKNGKMPTVSIEQAQKNYSKAVKAGLLKILSKMGISLLSSYCGAQIFEVYGLGKEVVDLAFRGSVSKIGGLTFDELARETLSFWVKAFSEDTAKRLENFGFIQFRPGGEYHANNPEMSKLLHKAVRQKSQSAFSVYQQHLANRPVNVLRDLLEFKSDCAPIPVGKVEPASSIVQRFCTGGMSLGAISRETHEAIAIAMNRLGGKSNSGEGGEDPIRWKPLSDVVDGYSPTLPHLKGLQNGDTATSAIKQVASGRFGVTPTFLANADQLEIKIAQGAKPGEGGQLPGKKVSMYIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIFDLHQVNPKAKVSVKLVAEAGIGTVASGVAKGNADIIQISGHDGGTGASPISSIKHAGGPWELGLTETHQTLIENGLRERVILRVDGGFRSGVDVMMAAAMGADEYGFGSVAMIATGCVMARICHTNNCPVGVASQREELRARFPGVPGDLVNYFLYVAEEVRGMLAQLGYEKLDDIIGRTELLHLRDISLAKTRHLDLSYILSSVGLPKGSSTEIRNQDAHTNGPVLDDVLLADPEIADAIENEKVVHKTTKIYNIDRAVCGRIAGVIAKKYGDTGFAGQLNITFTGSAGQSFACFLTPGMNIRLVGEANDYVGKGIAGGELVVTPVDEIGFQPEDAAIVGNTCLYGATGGQVFVRGKAGERFAVRNSLTEAVVEGTGDHCCEYMTGGCVVVLGKVGRNVAAGMTGGLAYILDEDNTLIPKVNREIVKIQRVSAPVGQMQLKSLIEAHVQKTGSNKGAAILKEWDKYLPLFWQLVPPSEEDTPEANAKYDTTATEQVTLQSA 1628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02107 1628 Gene3D Aldolase class I 538 904 IPR013785 -
Bva04g02107 1628 PANTHER FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE 47 1616 - -
Bva04g02107 1628 SUPERFAMILY FMN-linked oxidoreductases 555 1336 - -
Bva04g02107 1628 CDD GltS 112 529 - -
Bva04g02107 1628 CDD GltS_FMN 915 1311 IPR002932 GO:0006537|GO:0015930|GO:0016638
Bva04g02107 1628 Pfam Glutamate synthase central domain 561 853 IPR006982 GO:0006807|GO:0015930
Bva04g02107 1628 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 112 511 IPR017932 -
Bva04g02107 1628 Pfam Conserved region in glutamate synthase 912 1296 IPR002932 GO:0006537|GO:0015930|GO:0016638
Bva04g02107 1628 Pfam Glutamine amidotransferases class-II 112 534 IPR017932 -
Bva04g02107 1628 MobiDBLite consensus disorder prediction 1613 1628 - -
Bva04g02107 1628 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 112 648 IPR029055 -
Bva04g02107 1628 PANTHER FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 2, CHLOROPLASTIC 47 1616 - -
Bva04g02107 1628 MobiDBLite consensus disorder prediction 1605 1628 - -
Bva04g02107 1628 CDD gltB_C 1353 1603 IPR002489 GO:0016491
Bva04g02107 1628 SUPERFAMILY Alpha subunit of glutamate synthase, C-terminal domain 1347 1609 IPR036485 GO:0016491
Bva04g02107 1628 Gene3D - 1334 1609 IPR036485 GO:0016491
Bva04g02107 1628 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 112 536 IPR029055 -
Bva04g02107 1628 Pfam GXGXG motif 1378 1560 IPR002489 GO:0016491
Bva04g02107 1628 Gene3D Aldolase class I 586 1312 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02107 Bva-Chr4 20544094 20567234 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02107 K00284 - gmx:548016 2903.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02107 04 20544094 20567234 Bva04g02107 04 20544094 20567234 ECH