Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02068 ATGGGCAAAGCTGTAGTCTCTGACGAAGAAGAAGAGGTCGAACTCGAAGAGGATGAGAGGGAACCCGCTGATGGAGATGCACTAGACGACCGGGAAATGGATGACGATGATGAGGACGAAGAAGAGGAAGGGCAGGATGAATATGAAAAGGATGGATTTATAGTCGATGatatagaagaagaagaggatgaagaagagaggGCAGAAAGTGATGAGGAGCggcagaagaaaaagaaaaggaagaaaaaaGAGGAGTATGTCCTCGATGAAGATGATTATGAGCTGCTTGAGGACAATAATATCAATATTCATCGTCGGAAGGAGAGCAAGAAATTTAAGCGACTGAAGAAATTTCGAGGGGATACTGGTGAGGAGCCCTCTGGGCTATTCGATGAGGAAGAGTTTGTTGGGAGTGGTAAAGGTGGGCGAACTGCTGAGGAGAAGCTTAAACAAAGTTTATTTGGAGATGACGAAGGAGCTCCACTTGAAGACATTGCTGAAGAGGAGGAACAAGCTGAAGAAGAGGAGGATGAAGATATTGGTGAGGAAGATGAAATGGCAGACTTTATTGTTGACGAAGAAGAGGTTGATGAAAATGGAGCTCCTGTGAGACGAAGGAagctgaagaaaaagaaaataagacagGCGGCAGGAGTTTCTTCCACTTCCTTGTTAGAAGCTCAAGAATTATTTGGTGATGTTGATGAGTTGCTGCAGTCTCGCAAACAAAGTCTAGAATTACGTGAATATAAAGAGACTAGACTTGAAGATGAGTTTGAGCCAATTGTGCTTTCTGAGAAGTATATGACTGAGAAGGATGACCAAATTAGGAGGCGTGACCTTCCAGAAAGAATGCAGatatCAGAAGAGAGTACCGGTGCTCCTCCACTGGATGGAAGTAGTATAATTGAAGAGAGCCAATGGATATGTAATCAAATTAAAGCAGGAGCAATACCTTGGCTTCACAAGAAAGACACAACTACTCAAAATGATGGTGGGGATATACCAGTTGCCAGCACTGATATTGTCAAATTTTTGGAATTCCATCATGTGCAAAAATTAGATATTCCTTTTATTGCTATGTATCGGAAGGAGGGGTGTTTGAGCCTATTGAAAGATCCTGAAGCTGATGATGAGAATTGggataaaaatgagaagacACCTACTCTTAAATGGCACAAGGTACTTTGGGCAATTCAAGACTTGGACAGGAAGTGGCTGCTTCTTCAGAAGCGGAAGAGTGCCCTCCAAGCATATTATAATAAACGGTTTGAAGAAGAGTCCCGCCGAGTTTATGATGAAACAAGACTTAATTTGAATCAGCAGTTGTTTGAATCAGTTATGAGATCACTGAAGGCTGCAGAATCAGAGAGAGAGGTTGATGATgttgattcaaaatttaacttaCATTTCCCACCGGGTGAAGCTGGAGTTGAGGAAGGACAATATAAGAGGCCGAACAGGAAATCAAAATATAGTTCTTGTAGCAAAGCAGGATTGTGGGAGGTTGCAAGCAAGTTTGGGCGTAGTTCTGAACAACTTGGATTGCATCTATCATTAGAAGATCTTAGAAACTATGAGTTGGAGGATCCTAAGGAATCACCAGAGGAGATGGCTTCAAACTTCACATGTGCTATGTTTGATACACCTCAAGATGTACTTAAAGGGGCTCGACACATGGCATCTGTTGAGATAAGTTGTGAGCCTAGTGTTAGGAAACATGTCCGCAGTAGCTTTATGGACCATGCTGTAGTATCAACTTGTCCAACTGCTGATGGCAATGTAGTAATAGATTCTTTCCATCAGTTTGCTGGGGTGAAGTGGTTGCGAGAGAAGCCTTTGGCTAAATTTGAGGATGCACAATGGCTCCTTATACAGAAGGCAGAAGAGGAGAAATTAATTCAAGTTACTATTAAGCTGCCAGAAGGATATCTAAATAAGTTGATAAACGAATTcaatgaatattatattagtgaTAGCGTTAGTAGATCTGCTCAACTGTGGAATGAACAGAGGAAATTAATATTGCATGATGCActttttggtttcattttacCCTCGATGGAAAAAGAAGCACGGGCTTATCTGACAAGCAAAGCAAAGAATTGGTTACTTATGGAATACGGGAAGGCCTTGTGGAGTAAAGTTTCTGTGGGACCTTATCAACGAAAGGATGACCTTAACTCTGATGATGAAGCTGCTCCAAGAGTTATGGCTTGCTGTTGGGGCCCTGGCAAGCCAACAACCACTTTTGTGATGTTAGATTCTTCAGGGGAGGTGCTGGATGTGCTTTATGCTGGGTCCCTTACTTTGCGATCACAGAATGTTAATGACCAGCAACGGAAGAAAAATGACCAGGAGCGTGTTTTGAAGTTCATGACCGATCACCAACCACATGTGGTTGTTTTAGGAGCAGTGAATCTGTCATGTACCCGTTTGAAGGAAGATATATATGAGATCATTTTTAAGATGGTTGAGGAAAACCCTAGAGATGTTGGGCATGAAATGGATGGCCTCAGCATTGTGTATGGCGACGAATCACTTCCCCGTCTTTATGAAAATTCTCGAATCTCATCAGAACAACTCCCTTCACAACAAGGTATAGTAAAGCGTGCTGTAGCACTTGGTCGACATTTGCAGAACCCATTGGCAATGGTTGCAACTCTGTGTGGACCTAGGAGGGAAATATTATCTTGGAAATTGTGCTCTTTGGAGGGCTTTCTCAACCCTGATGAGAAGTATGGAATGGTAGAGCAGGTTATGGTGGATGTGACAAATCAAGTGGGCCTGGACATTAATTTAGCCATAAGTCATGAGTGGTTATTTGCTCCATTACAGTTCATTTCTGGGCTTGGTCCAAGGAAAGCTGCATCCTTACAGAGATCCCTTGTAAGAACTGGAGCAATTTTTTCTCGGAAGGACTTCTTAACCTCACATGAAGTGGGTAAAAAGGTTTTTGTCAATGCATCAGGTTTCTTGCGTGTTCGGCGGAGTGGATTGGCTGCAAGCAGCAGCCAGTTCATTGACTTGCTTGATGATACAAGAATTCATCCAGAATCTTATACTCTTGCACAGGAGTTGGCCAAAGATGTGTATGATGCAGATGGCAGTGGTAAAGCAAAtgacgatgatgatgatgcCCTGGAGATGGCTATAGAGCATGTCAGAGACCGACCTAGTTATTTGAAAAACCTTGATGTTGAGAAATATGCTAAAGACAAGAACCggcaagaaaagagagaaacattCTATGATATGAAAAGAGAATTGATTCAGGGTTTTCAGGATTGGCATAAACAATATGAAGAACCTAGTCAGGATGAGGAATTCTATATGATTTCAGGCGAGACTGAGGAGACCCTTGCTGAAGGGAAAGTTGTACAAGCCACAGTTCGTAGGGTGCAAGCCCAAAAGGCTATTTGTGTGCTTGAATCTGGGTTGACTGGGATTCTTATGAAGGAAGACTACACAGATGACTGGAGAGACTTAATTGAACTATCTGACAGGCTACATGCAGGTGACATTCTCACCtgtaaaatcaaatcaattcaaaagaaTAGGTATCAAGTCTTCCTTGTTTGTAAGGAAAGTGAAATGAGAAGTAACCGGTTACAAAATAACCTCAATCTTGATCCCTATTACCATGAAGACCGGAGCAGCCTACAAACTGAACAAGACAAAGTTCATAAACAAAAGGAGCTTGCAAAGAAGCATTTCAAGCCAAGAATGATAGTTCATCCACGCTTTCAGAACATAACTGCAGATGAAGCAATGGAGTACCTGTCTGACAAAGATCCTGGAGAAAGTATTATCCGTCCTAGTTCTCGTGGCCCTTCATATCTTACTTTAACCCTCAAAATCAATGATGGAGTTTATGCTCACAAAGATATAGCCGAAGGTGGGAAGGAACATAAGGACATCACGAGCTTGCTTCGAATTGGGAAGACACTAAAAATTGGGGATGACACTTTCGAGGATTTAGACGAGGTAATGGATCGTTATGTTGATCCCTTGGTGACTCACTTAAAGGCAATGTTAAGCTATCGCAAATTCAGGAAGGGTACAAAAGCAGAAGTTGATGAGCTTTTGAGGATAGAGAAGGCTGAGAATCCTATGCGGATAGTCTATAGTTTTGGTATATCCCATGAACATCCTGGCACGTTCATATTGACTTATATAAGAAGTACAAATCCACACCATGAGTACATTGGACTTTATCCAAATGGATTCAAGTTCCGGAAAAGGCCATTTGAAGACATAGATAGGCTTGTGGCATATTTTCAGAAGCATATCGATGATCCCCTGCATAATTCCTCCCCCTCGATTAGATCTGTTGCTGCTATGGTCCCAATGCGAAGCCCTGCAACTGGGGGCTCATCAGGGACCTCTATGGATAGCAGTTGGGGTGGTTCAAACAGTGAGGGTGGCTTTAGAGGGCACTCTTATGATAGGGATCGATCCTCTACCCCAGGTTCCAGGACAGGACGAAGTGATTACAGAAACAATGGCAATCGAGATGAGCATCCTAGTGGAGTGCCTCGCCCATATGGTGGTGGACGAGGACGTGGAAGAGGCTCTTATAACAGCAGTAGAGGAAACAGCTCAAATAATGAAAGACAGGACTCTGGTTATAGTTCAGGCAGATGGGGTTCTGTTACCAAGGATGGTGATGGTTTAAACAATTTTCCAGGAGCTAAGGTTCAGAACTCTCCAGGAAGGGAAGCTTTTCCCAGTGGTTGGGTCTCTGGTGGAAGTGCCGGAGATAGTGGTTGGGGTGGTAGCGGAGCTAGTGCCAATGACAACAGTGGCAGTGGCTGGGGAAGTTGGCCCGAAGAAATCTG 4841 0.4142 MGKAVVSDEEEEVELEEDEREPADGDALDDREMDDDDEDEEEEGQDEYEKDGFIVDDIEEEEDEEERAESDEERQKKKKRKKKEEYVLDEDDYELLEDNNINIHRRKESKKFKRLKKFRGDTGEEPSGLFDEEEFVGSGKGGRTAEEKLKQSLFGDDEGAPLEDIAEEEEQAEEEEDEDIGEEDEMADFIVDEEEVDENGAPVRRRKLKKKKIRQAAGVSSTSLLEAQELFGDVDELLQSRKQSLELREYKETRLEDEFEPIVLSEKYMTEKDDQIRRRDLPERMQISEESTGAPPLDGSSIIEESQWICNQIKAGAIPWLHKKDTTTQNDGGDIPVASTDIVKFLEFHHVQKLDIPFIAMYRKEGCLSLLKDPEADDENWDKNEKTPTLKWHKVLWAIQDLDRKWLLLQKRKSALQAYYNKRFEEESRRVYDETRLNLNQQLFESVMRSLKAAESEREVDDVDSKFNLHFPPGEAGVEEGQYKRPNRKSKYSSCSKAGLWEVASKFGRSSEQLGLHLSLEDLRNYELEDPKESPEEMASNFTCAMFDTPQDVLKGARHMASVEISCEPSVRKHVRSSFMDHAVVSTCPTADGNVVIDSFHQFAGVKWLREKPLAKFEDAQWLLIQKAEEEKLIQVTIKLPEGYLNKLINEFNEYYISDSVSRSAQLWNEQRKLILHDALFGFILPSMEKEARAYLTSKAKNWLLMEYGKALWSKVSVGPYQRKDDLNSDDEAAPRVMACCWGPGKPTTTFVMLDSSGEVLDVLYAGSLTLRSQNVNDQQRKKNDQERVLKFMTDHQPHVVVLGAVNLSCTRLKEDIYEIIFKMVEENPRDVGHEMDGLSIVYGDESLPRLYENSRISSEQLPSQQGIVKRAVALGRHLQNPLAMVATLCGPRREILSWKLCSLEGFLNPDEKYGMVEQVMVDVTNQVGLDINLAISHEWLFAPLQFISGLGPRKAASLQRSLVRTGAIFSRKDFLTSHEVGKKVFVNASGFLRVRRSGLAASSSQFIDLLDDTRIHPESYTLAQELAKDVYDADGSGKANDDDDDALEMAIEHVRDRPSYLKNLDVEKYAKDKNRQEKRETFYDMKRELIQGFQDWHKQYEEPSQDEEFYMISGETEETLAEGKVVQATVRRVQAQKAICVLESGLTGILMKEDYTDDWRDLIELSDRLHAGDILTCKIKSIQKNRYQVFLVCKESEMRSNRLQNNLNLDPYYHEDRSSLQTEQDKVHKQKELAKKHFKPRMIVHPRFQNITADEAMEYLSDKDPGESIIRPSSRGPSYLTLTLKINDGVYAHKDIAEGGKEHKDITSLLRIGKTLKIGDDTFEDLDEVMDRYVDPLVTHLKAMLSYRKFRKGTKAEVDELLRIEKAENPMRIVYSFGISHEHPGTFILTYIRSTNPHHEYIGLYPNGFKFRKRPFEDIDRLVAYFQKHIDDPLHNSSPSIRSVAAMVPMRSPATGGSSGTSMDSSWGGSNSEGGFRGHSYDRDRSSTPGSRTGRSDYRNNGNRDEHPSGVPRPYGGGRGRGRGSYNSSRGNSSNNERQDSGYSSGRWGSVTKDGDGLNNFPGAKVQNSPGREAFPSGWVSGGSAGDSGWGGSGASANDNSGSGWGSWPEEI 1613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02068 1613 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 82 1558 - -
Bva04g02068 1613 Pfam Holliday-junction resolvase-like of SPT6 734 890 IPR028231 -
Bva04g02068 1613 Gene3D SH2 domain 1232 1343 IPR036860 -
Bva04g02068 1613 Pfam Helix-hairpin-helix motif 894 995 IPR032706 -
Bva04g02068 1613 Pfam Helix-turn-helix DNA-binding domain of SPT6 300 422 IPR028088 GO:0003677
Bva04g02068 1613 MobiDBLite consensus disorder prediction 1592 1606 - -
Bva04g02068 1613 SUPERFAMILY RuvA domain 2-like 1009 1097 IPR010994 -
Bva04g02068 1613 MobiDBLite consensus disorder prediction 1526 1549 - -
Bva04g02068 1613 SUPERFAMILY SH2 domain 1381 1432 IPR036860 -
Bva04g02068 1613 MobiDBLite consensus disorder prediction 119 184 - -
Bva04g02068 1613 MobiDBLite consensus disorder prediction 160 184 - -
Bva04g02068 1613 Gene3D - 726 1116 IPR037027 GO:0006139
Bva04g02068 1613 Pfam Acidic N-terminal SPT6 34 119 IPR028083 -
Bva04g02068 1613 SUPERFAMILY Ribonuclease H-like 735 890 IPR012337 -
Bva04g02068 1613 Gene3D SH2 domain 1344 1440 IPR036860 -
Bva04g02068 1613 SUPERFAMILY RuvA domain 2-like 906 996 IPR010994 -
Bva04g02068 1613 ProSiteProfiles S1 domain profile. 1124 1195 IPR003029 GO:0003676
Bva04g02068 1613 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 82 1558 IPR017072 GO:0032968
Bva04g02068 1613 SUPERFAMILY SH2 domain 1249 1335 IPR036860 -
Bva04g02068 1613 MobiDBLite consensus disorder prediction 1455 1474 - -
Bva04g02068 1613 Pfam HHH domain 1010 1091 IPR041692 -
Bva04g02068 1613 Coils Coil 162 185 - -
Bva04g02068 1613 Pfam SH2 domain 1213 1430 IPR035420 -
Bva04g02068 1613 MobiDBLite consensus disorder prediction 136 154 - -
Bva04g02068 1613 MobiDBLite consensus disorder prediction 9 69 - -
Bva04g02068 1613 Gene3D - 259 998 - -
Bva04g02068 1613 Gene3D - 1117 1204 IPR012340 -
Bva04g02068 1613 MobiDBLite consensus disorder prediction 1 89 - -
Bva04g02068 1613 Gene3D - 292 490 IPR023319 -
Bva04g02068 1613 PIRSF Spt6 3 1501 IPR017072 GO:0032968
Bva04g02068 1613 Gene3D - 1004 1097 IPR042066 -
Bva04g02068 1613 CDD SH2_Nterm_SPT6_like 1246 1334 IPR035019 -
Bva04g02068 1613 SUPERFAMILY Nucleic acid-binding proteins 1119 1199 IPR012340 -
Bva04g02068 1613 SMART S1_6 1122 1195 IPR022967 -
Bva04g02068 1613 Coils Coil 55 85 - -
Bva04g02068 1613 SUPERFAMILY Tex N-terminal region-like 340 714 - -
Bva04g02068 1613 CDD SH2_Cterm_SPT6_like 1345 1431 IPR035018 -
Bva04g02068 1613 Gene3D - 491 928 IPR023323 -
Bva04g02068 1613 MobiDBLite consensus disorder prediction 1451 1613 - -
Bva04g02068 1613 SMART rnase_8s 735 853 IPR006641 GO:0006139
Bva04g02068 1613 MobiDBLite consensus disorder prediction 70 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02068 Bva-Chr4 20292850 20302370 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02068 K11292 - gmx:100808591 2497.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02068 04 20292850 20302370 Bva04g02068 04 20292850 20302370 ECH