Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01997 ATGAATCAGGACGCCATGAATGTTGATCAACCTCAGGCCACTACGGAGGCGCAGACTTTACAGAGTCTGACGGGGGGTTCTTTGTCTTCGTCTGTTGCCAAGCTTTCAGGTTCTTCACGGTGCATACCCTCGGACAAAGACTTTCACTTCTATTATAACTTCGATGAATTTAAGAATCCAATTGATGAAATCACCAAGAAATCACAGTCTATGCTTGAAACCATCGGTTCCTCGGCCCATATGTGGGGCAATGAAATGACCTTTCCTATGGATATCGATGATGCATATGAGTGGTTGGTTAACGTGAATGATGAGGTGTATGAGCGGTTCGATTTGTCAGTGGATGAGTTTCAGAGGATTCggaagaaagaggaagaggtAGGGCGTCCATTGAATTATTTGGGGGATTTGGAAAATGGATTCCAGTTGGTTTctgggaagaaaaagaaggggaTGAGTCATCCGGAGGCAGGGGAAGAACAGCAGCAATACTCTACTCCAGCCTCAGGCATTAAAGTGGCcacaaaagataaaagaacaactggaccgaagccaaaggTGCCATTTCATATACCAACGATTAAAAGACCTCAGGATGAGTATAACATATTGGTTAATAATTCGAACCAGCCTTTTGAGCATGTTTGGTTGCAGAAGAGTGATGATGGTCAGAGGTTTATTCATCCACTGGAAAAACACTCTGTCTTGGGTTTTGTTGACAAAGATCTTGGGGATGTTGAGCCAATAAAACCTCTGTCAATAGAATGTACCCCTTTTAAGCTTGTGGAGGATGTCAAGAGTTTGAAAGAGTTGGCTTCTAAGCTGCGTGCTGTTAATGAATTTGCGGTAGATTTGGAACATAATCAATATCGGTCATTTCAAGGATTGACTTGCTTGATGCAAATCTCAACCAGGACTGAAGATTTTGTGGTAGACACTTTGAAGCTTCGCATTCATATTGGACCCTATCTAAGAGAAGTTTTCAAGGATCCTACCAAGAGGAAGGCCATGCATGGAGCAGATCGGGATATTATGTGGCTTCAACGAGATTTTGGCATTTACATTTGCAATCTATTTGACACTGGACAGGCCTCTAGGGTATTAAAATTGGAGAGAAATAGTTTGGAGCATCTTTTACATCACTTTTGTGACGTCATTGCTAATAAAGAATACCAAAATGCAGATTGGAGATTGCGCCCTCTTCCTGATGAGATGATAAGATATGCCAGAGAAGATACACATTatctactatatatatatgacttaaTGAGAATACAGTTGTTTGCATTGCCTAAGGAGTCTGAAAGTTCCGATATTCCTCTGGTGGAGGTCTATAAGCGCAGTTATGATGTCTGCATGCAGCTGTATGAAAAAGAACTTCTGACAGAGAACTCCTATCTTCATATATATGGGTTGCCAGGGGCTGGTTTTGATGCTCAGCAGCTTGCCATTGTTTCGGGACTATGTGAATGGCGGGATGCTGTTGCTCGTGCAGAGGATGAGAGTACTGGTTATGTATTGCCAAATAAAACTCTTCTTGAACTTGCTAAGCAGATGCCTGTCACAACAAGTAAGCTACGCCGACTGGTGAAAACAAAGCACCCTTATCTTGAGTGTAATCTTGATACTGTTGTCAGCATCATTAGGCATTCTATGCAGAATGCTGCTGCCTTTGAAGCAGCTGCACAACATTTGAAAGAGGGACGCTCTATAACTGTATCTGATGCTATAACTGCAGAAGATGGAACTGGAACTCCCCTACATGATACACCAATCTTAAAGGCTGCAAATGCCATAAAAGGTGGTGGAGTCGTAAATCCCAGAGGTGTAAACATTTCAGAGAAATCGCCTTCTTTTGATCGTGAAGAGTCGTCTTTTCAGCATCAGGATAAAACTGGACAAGTAAAAATTGTATCCAATCATCTCCGCAAAGAGTTCCCAATTGACAGTCTGAATGTTGGTGCACCCTCTACAGCAAAGGGTACTGGCGCAACTGTTCAGGTGGCAAGAAAGCCAACTGGTGCTTTCGGGGTGCTACTGGGAAATTCATCTTCAAAGAGGAAGCTTGATACTCATAAAAAGGAAGAGGTGAAGCTGGATCAGATTAGGTCTTCGGTCACCCTTCCTTTCCATTCATTTTTGGGTGGTAATGAGACATCAAAGGTAGTTGTACAAACTCCTGGTACAACCTCTGAAATGTCAGAGCCGCAGAAACCTGTTTCAGATAAAGTTTCCACCCCCATTCTGGATGAGATTATAATGCTTGATGATGGTACAGATCCCGAGAATGAGACACACAAAAACCTAGAAAGCACAAACGACTGCAGGGAAAATAACTCTCTGGTGTTCGCCTCAGGgaaagaggatgaagaagagcCAATGTCTCTCTCGGAATTGTCATCGAACTTTCAGAAATGCTTTCAGTCAAACAACCAAAATAGTAAAGCCAAACAGACCAAGAAAACCGACGAACCCAGTGGCTTATTGCAGCTGAAGCCATTTGACTATGAAGAGGCAAGGAAACTGGTTAAGTTTGGGGAAGATGCAGAGGTTTCCCAGGGAGATGATGGTCTTGCTCCAGTCCGTGACTCGGttgggaagaagaaaagttcaGTAACAGGACGTGGACAAACCAGCGATTTGGCCAAGGAATTGCAGCAAGGTAGAAGACGTCAGGCATTTCCAGCTTCTGGGAATCGTAGTGCAACTTTCCGTTA 2717 0.4115 MNQDAMNVDQPQATTEAQTLQSLTGGSLSSSVAKLSGSSRCIPSDKDFHFYYNFDEFKNPIDEITKKSQSMLETIGSSAHMWGNEMTFPMDIDDAYEWLVNVNDEVYERFDLSVDEFQRIRKKEEEVGRPLNYLGDLENGFQLVSGKKKKGMSHPEAGEEQQQYSTPASGIKVATKDKRTTGPKPKVPFHIPTIKRPQDEYNILVNNSNQPFEHVWLQKSDDGQRFIHPLEKHSVLGFVDKDLGDVEPIKPLSIECTPFKLVEDVKSLKELASKLRAVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRIHIGPYLREVFKDPTKRKAMHGADRDIMWLQRDFGIYICNLFDTGQASRVLKLERNSLEHLLHHFCDVIANKEYQNADWRLRPLPDEMIRYAREDTHYLLYIYDLMRIQLFALPKESESSDIPLVEVYKRSYDVCMQLYEKELLTENSYLHIYGLPGAGFDAQQLAIVSGLCEWRDAVARAEDESTGYVLPNKTLLELAKQMPVTTSKLRRLVKTKHPYLECNLDTVVSIIRHSMQNAAAFEAAAQHLKEGRSITVSDAITAEDGTGTPLHDTPILKAANAIKGGGVVNPRGVNISEKSPSFDREESSFQHQDKTGQVKIVSNHLRKEFPIDSLNVGAPSTAKGTGATVQVARKPTGAFGVLLGNSSSKRKLDTHKKEEVKLDQIRSSVTLPFHSFLGGNETSKVVVQTPGTTSEMSEPQKPVSDKVSTPILDEIIMLDDGTDPENETHKNLESTNDCRENNSLVFASGKEDEEEPMSLSELSSNFQKCFQSNNQNSKAKQTKKTDEPSGLLQLKPFDYEEARKLVKFGEDAEVSQGDDGLAPVRDSVGKKKSSVTGRGQTSDLAKELQQGRRRQAFPASGNRSATFR 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01997 905 PANTHER 3'-5' EXONUCLEASE 32 738 - -
Bva04g01997 905 Pfam HRDC domain 481 530 IPR002121 GO:0003676
Bva04g01997 905 SMART 35exoneu6 259 428 IPR002562 GO:0003676|GO:0006139|GO:0008408
Bva04g01997 905 CDD Rrp6p_like_exo 255 447 - -
Bva04g01997 905 Pfam 3'-5' exonuclease 261 424 IPR002562 GO:0003676|GO:0006139|GO:0008408
Bva04g01997 905 SUPERFAMILY Ribonuclease H-like 194 432 IPR012337 -
Bva04g01997 905 Pfam PMC2NT (NUC016) domain 38 118 IPR012588 GO:0000176|GO:0006396
Bva04g01997 905 MobiDBLite consensus disorder prediction 847 905 - -
Bva04g01997 905 ProSiteProfiles HRDC domain profile. 478 558 IPR002121 GO:0003676
Bva04g01997 905 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 32 738 IPR045092 GO:0000175|GO:0000467
Bva04g01997 905 SUPERFAMILY HRDC-like 463 553 IPR010997 GO:0000166|GO:0044237
Bva04g01997 905 Gene3D - 188 466 IPR036397 GO:0003676
Bva04g01997 905 SMART hrdc7 478 558 IPR002121 GO:0003676
Bva04g01997 905 MobiDBLite consensus disorder prediction 147 169 - -
Bva04g01997 905 Gene3D HRDC domain 467 560 IPR044876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01997 Bva-Chr4 19891586 19899763 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01997 K12591 - gmx:100815329 1168.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01997 04 19891586 19899763 Bva04g01997 04 19891586 19899763 ECH