Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01992 ATGTCACATATCAAAATGTTgTGTGAAGCAAGAACCGGTCTCAATACACCCAAAAGAACAATGGCATCCCATATTGTTGGATACCCTCGCATGGGCCCCAAGAGAGAGCTAAAGTTTGCTCTCGAGTCATTCTGGGATGGCAAGAGCAGTGCCGAGGACTTGCAGAAGGTGGCTGCTGATCTCAGGGCATCAATCTGGAAGCAGATGGCCGGTGCTGGGATCAAGTATATCCCCAGCAACACTTTCTCCTACTATGATCAGGTGCTTGATGCTACTGCAACCCTTGGTGCTGTTCCACCTAGATATGGTTACTCTGATGGTGAGATCGGATTTGATATCTACTTTTCCATGGCCAGAGGTAATGCATCAGTACCTGCAATGGAGATGACCAAGTGGTTTGACACCAACTACCACTTTATTGTCCCCGAATTGGGACCTGATGTGAAGTTCACTTATGCTTCTCACAAGGCAGTGAATGAATACAAGGAAGCAAAAGCGCTTGGAGTAGATACCATTCCAGTCCTCATTGGTCCTGTCTCATACTTGTTGCTGTCCAAACCTGCCAAGGGTGTTGACAAAaacttctctcttctctccctCCTCCCAAAAGTCCTTTCTGTCTACAAGGAAGTTGTGGCTGATCTTAAAGCAGCCGGTGCCTCATGGATTCAATTTGATGAACCAACCCTTGCCTTGGACCTCGAGCCTCACAAATTGCAAGCATTTACTGAGGCATATGCCGAGCTTGAATCTTCTTTATCTGGTTTGAATGTTCTCGTCGAGACCTACTTCGCTGATATTCCTGCTGAGGCATACAAGACCCTCACTGGTCTGAAGGGTGTCACAGCTTACGGATTTGATTTAGTCCGTGGAACTCAGACTCTTGGATTGATCAAGAGTGGCTTCCCCAGTGGCAAATACCTCTTCGCTGGAGTGGTTGATGGAAGGAACATTTGGGCCAACGATCTTGCCGCTTCTACCAGTATATTAGTGGATCTTCAGGGCATTGTGGGCAAAGATAAACTTGTTGTGTCCACCTCCTGCTCTCTTCTTCATACTGCTGTTGACCTTGTTAATGAGACCAAGTTGGATGATGAAATCAAGTCATGGCTAGCTTTTGCTGCTCAAAAGATTGTTGAAGTGAATGCATTGGCCAAGGCATTGTCTGGTGCAAAGGATGAGgCATTCTTCTCTGCTAATGCTGCAGCTCTGGCTTCAAGGAAGTCCTCTCCTAGAGTGACAAATGAGGCCGTCCAGAAGGCTGCTGCTGCATTGAAGGGTTCTGACCATCGCCGTGCCACTAATGTCAGTGCCAGACTGGATGCTCAGCAGAAGAAGCTCAACCTTCCAATTCTCCCAACTACCACTATTGGATCATTCCCTCAAACTGTAGAGTTGAGGAGAGTACGCCGTGAATACAAGGCCAACAAGATCTCTGAGGAAGAGTatgttaagttaattaaagaGGAAATCAAAAAGGTTGTAGAACTCCAGGAAGAGCTTGACATTGATGTCTTGGTCCATGGGGAACCTGAGAGGAATGATATGGTTGAGTACTTTGGCGAGCAGTTGTCCGGGTTTGCCTTTACTGTTAACGGGTGGGTGCAATCTTATGGATCTCGTTGTGTCAAGCCACCAATCATCTACGGTGATGTGAGCCGCCCAAAGCCAATGACCGTCTTCTGGTCCTCTGCAGCTCAGAGCATGACCAAACGCCCAATGAAGGGAATGCTTACTGGTCCTGTCACCATTCTCAACTGGTCCTTTGTTCGTAATGACCAGCCCAGATCTGAGACTACCTACCAGATTGCTTTGGCCATCAAGGACGAAGTAGAAGATCTTGAGAAAGCTGGCATTAACGTTATCCAAATTGATGAGGCTGCTTTAAGAGAGGGTCTCCCCTTGAGGAAGTCAGAGCAAGCTCACTACTTGGATTGGGCTGTCCACGCCTTCAGGATCACCAACGTTGGTGTTAAGGATACCACTCAGATCCACACCCACATGTGCTACTCCAACTTCAATGACATCATCCACTCAATCATTGACATGGATGCTGATGTGATCACCATTGAGAACTCTCGTTCTGATGAAAAACTCCTCTCAGTCTTCCGTGAAGGAGTGAAGTACGGTGCTGGAATTGGCCCTGGTGTCTATGACATCCACTCTCCCAGAATACCACCAACCGAAGAAATTGCCGACAGGATCAACAAGATGCTGGCAGTGCTTGAGAAGAACATCTTGTGGGTCAACCCTGACTGTGGTCTCAAGACTCGCAAGTACACTGAGGTCAAGCCCGCCCTCACCAACATGGTTGCTGCTACAAAACTCATCCGTAACCAACTCGCCAGCGCCAAGTG 2357 0.4714 MSHIKMLCEARTGLNTPKRTMASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVAADLRASIWKQMAGAGIKYIPSNTFSYYDQVLDATATLGAVPPRYGYSDGEIGFDIYFSMARGNASVPAMEMTKWFDTNYHFIVPELGPDVKFTYASHKAVNEYKEAKALGVDTIPVLIGPVSYLLLSKPAKGVDKNFSLLSLLPKVLSVYKEVVADLKAAGASWIQFDEPTLALDLEPHKLQAFTEAYAELESSLSGLNVLVETYFADIPAEAYKTLTGLKGVTAYGFDLVRGTQTLGLIKSGFPSGKYLFAGVVDGRNIWANDLAASTSILVDLQGIVGKDKLVVSTSCSLLHTAVDLVNETKLDDEIKSWLAFAAQKIVEVNALAKALSGAKDEAFFSANAAALASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTVELRRVRREYKANKISEEEYVKLIKEEIKKVVELQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKPMTVFWSSAAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRSETTYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEQAHYLDWAVHAFRITNVGVKDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPPTEEIADRINKMLAVLEKNILWVNPDCGLKTRKYTEVKPALTNMVAATKLIRNQLASAK 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01992 785 Hamap 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 21 780 IPR006276 GO:0003871|GO:0008270|GO:0009086
Bva04g01992 785 SUPERFAMILY UROD/MetE-like 417 780 IPR038071 -
Bva04g01992 785 CDD CIMS_N_terminal_like 23 387 - -
Bva04g01992 785 Coils Coil 480 500 - -
Bva04g01992 785 Gene3D - 410 778 IPR038071 -
Bva04g01992 785 TIGRFAM met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 26 780 IPR006276 GO:0003871|GO:0008270|GO:0009086
Bva04g01992 785 Gene3D - 25 545 IPR038071 -
Bva04g01992 785 SUPERFAMILY UROD/MetE-like 23 415 IPR038071 -
Bva04g01992 785 CDD CIMS_C_terminal_like 453 776 IPR002629 GO:0003871|GO:0008270|GO:0009086
Bva04g01992 785 PANTHER 5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE--HOMOCYSTEINE METHYLTRANSFERASE 21 785 - -
Bva04g01992 785 PANTHER COBALAMIN-INDEPENDENT METHIONINE SYNTHASE 21 785 - -
Bva04g01992 785 Pfam Cobalamin-independent synthase, Catalytic domain 452 775 IPR002629 GO:0003871|GO:0008270|GO:0009086
Bva04g01992 785 PIRSF Met_synth_MetE 20 785 IPR006276 GO:0003871|GO:0008270|GO:0009086
Bva04g01992 785 Pfam Cobalamin-independent synthase, N-terminal domain 23 335 IPR013215 GO:0003871|GO:0008270|GO:0008652
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01992 Bva-Chr4 19870853 19876415 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01992 K00549 - gmx:547643 1384.39