Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01984 ATGGAAGTAACTGTTTCTCCACAAGCACAAAAGCTGAATTTGCAGCCACCTTGCCGCAAACTTTCACATGCTGGGTCCCAGAAAGATCTGTGGCTTGTGGTGCGTGAAGGATCTTTAAATGATGTGGAATTGGCCTTGGTGCTATTAAAGAAGAATGGGGGTAATATCAATTCAAGGAATGCCTTTGGGCTGACACCTCTTCATATTGCTACATGGAGAAACAACGTCCCCATTGTCAGGAGGCTTCTTACAGCGGGTGCTGATCCTGATGCTCGaGATGGAGAATCAGGATGGAGCAGCCTTCACAGGGCGCTGCATTTTGGTCATCTTGCTGTGGCTAGCATCCTTCTTCAGCATGGTGCCTCCATTACATTGGAGGACTCGAAATCTCGTATACCTGTAGATCTCCTATCTGGCCCTGTGACTCAGGTTCTTGGAAATGAACACAATGCAGTGGCTACGGAGGTCTTCAGTTGGGGAAGTGGCACAAACTATCAACTTGGAACTGGAAACGCACATATTCAGAAGTTACCATGTAAAGTTGATTCACTTAATGGTTCTTTCATAAAGTTGATTTCTGCTGCAAAGTTCCATAGTGTGGCGGTTACTGCTCGTGGAGAAGTGTATACTTGGGGATTTGGAAGGGGGGGCCGTCTTGGGCACCCTGATTTTGACATCCACAGTGGTCAAGCTGCTGTCATCACTCCACGTCAGGTGACTTCTGGTCTAGGTTACCGCCAAGTGAAGGCAATTGCTGCAGCTAAGCATCATACTGTTATTGCTACTGAAGCTGGGGAAGTGTTCACCTGGGGATCCAATAGAGAGGGACAACTTGGCTACACTTCTGTAGATACCCAGCCCACACCTCGTAGAGTGACTTCTTTAAGGTCAAAAATTGTTGCTGTAGCTGCAGCAAACAAGCACACAGCTGTAGTTTCGGATTTAGGTGAAGTTTTTACTTGGGGCTGCAACAGAGAGGGTCAGCTCGGTTATGGCACTTCAAACTCAGCATCCAATTACACTCCTCATAtagttgaatatttgaagGGAAAGACTTTTACTAGGGTTTCTGCCGCAAAATACCATACAGTTGTATTAGGAGCTGATGGGGAGGTTTACACTTGGGGTCATCGACTTGTTACTCCAAGACGTGTAGTCATTACTAGGAACTTGAAGAAAAGTGGAAGTACTCCTTTGAAGTTTCATCGAACAGAACGACTTCATGTGGTTTCTATTGCTGCAGGAGTGACACATAGCATGGCTACTACGGATGATGGTGCATTGTTTTATTGGGTTTCCTCAGACCCTGATCTTAGATGTCAACAGTTATATACCATGTGTGGAAGAAATATGGTGAGCATAGCTGCTGGGAAGTACTGGGCCTCTGCAGTTACAGCTACAGGTGATGTCTACATGTGGGATGGGAAAAAAGTTAAGGATAAGCCACTTATTGCAACCCGATTGCATGGTATAAAGAGGGCTACTTCAGTTTCAGTGGGGGAAACACATTTATTAATTGTCGCTTCCCTCTATCATCCCATTTATCCCCCCAACATGAACAAGGACTCTCAGAACCTCAAGTTGGATAATAGGGATGAGATCGAAGAGTTAaatgaagatattttatttgaggACATGGAGCCCAATAATATGACATCTAGTATACGAAGAGATAATTTTGGTCCAAGACCCATACCCAGCTTAAAGAGTCTTTGTGAAAAAGTAGCAGCTGACTGTCTAGTGGAGCCACGGAATGCTATACAATTGCTTGAGATTGCTGATTCTCTTGGAGCAGATGATCTGAGGAAGTACTGTGAGGATATTGTCTTGCGCAACCttgattatgtttttatgGTTTCATCACAATCTATGGCAAGTGCTTCACCGGATATTTTGGCTAACCTTGAGAAGTCATTAGACCATAGATCATCTGAGCCTTGGAGTCACCGTCGGTTCCCTACTTCAACTGCTACTTTCCCTGTCATCATTAACAGTGAAGAGGATGATAGTGAGATGGAGTTCCAAAGGACTCGTGACAAACCCATGAAAATGTCTGAGTTGAAGTTGGAGAATGACCAAAGACAAGACTGCTTTTTACAGCCCAAGGATGACCCCAATCTACTCATCTCCAAATTAGTTCGTGCACTAAGGAAGAAGTTGCAGCAGATTGAGATGCTTGAAGCTAAACAATCTAATGGTTATCTGCTTGATGACCAGCAGGTTGCCAAGATTCAATCAAAGTCAGCTCTTGAGAGCTCACTTGCTGATCTAGGTGTTCCTGTTGAGACTTCACAGAATAAGGAACTGTCTTCTGTACTGCCAGATGGAAAAGGTAGTAGAAAGGGTAATCaatcaagaaaacaaaggagAAAGAGCAAAGCTAGTGCAGTCCAGACGGAAGTTGATTCTGTTTTTACCAGAACTGAAATCATGCCTGAACCTGTCGAGGACTTAATGGGGGTGGAAGTCACGGAGGTTACTGTCACAAAGttGGAAGATGCTGCAAGTGAGCAAATCACAGCCAACGAACGAGCAAAAGATTCAGCTTTTGTTGTTCAGAAGAAGGATTCCTTAGAATTGCTGAAAAATAACGGTCAATCCCCTGAGGTTTCtaagaagaaaagcaagaagGGTGCCCTTTCTATGTTTCTGAGTGGTGCTCTTGATGATGCCCCAAAAGAAGTTGCCCCTCCAAGAACTAAAAGTGAGGGTCCAGCATGGGGTGGGGCCAAGTTTTCAAAGAGCTCTGCTTCGCTTCGTGACATCCAGGATGAGCAGAgtaaatttaaaggaaacaTGGTTGCTAGAAACAAAGATCCTCCAGAAGATCTTTCTGATGGTGGCAGTGGGGGCAAGATACTGCTGGGTTCATTTCTTCCTTCCAGCCCAATACCAGTTGCCTCAACGCGCACTTGCCAGGCATCTGATGGAGACAAAAGTACCCCTCCTTGGGCTGCTTCTGGAACCCCACCTCATCTCTCTCGTCCATCTTTTAGGGACATCCAAATGCAGCAGGGGAAAAAACAGCTAAATCTTTCCCACAGTCCCAAAACTAGTACAGCTGGATTCACCATTGCCACCGGTCAAGGCTCGCCATCAGAAGCAAACGGGGTGAACCGCTGGTTCAAGCCCGAGGTGGAGACACCATCCTCAATTCGTTCAATTCAGATTGAGGAAAAAGCTATGAAGGATCTCAAACGCTTCTACTCCACTGTTAAGGTTGTCAAAAGGGAATCTTA 3239 0.4415 MEVTVSPQAQKLNLQPPCRKLSHAGSQKDLWLVVREGSLNDVELALVLLKKNGGNINSRNAFGLTPLHIATWRNNVPIVRRLLTAGADPDARDGESGWSSLHRALHFGHLAVASILLQHGASITLEDSKSRIPVDLLSGPVTQVLGNEHNAVATEVFSWGSGTNYQLGTGNAHIQKLPCKVDSLNGSFIKLISAAKFHSVAVTARGEVYTWGFGRGGRLGHPDFDIHSGQAAVITPRQVTSGLGYRQVKAIAAAKHHTVIATEAGEVFTWGSNREGQLGYTSVDTQPTPRRVTSLRSKIVAVAAANKHTAVVSDLGEVFTWGCNREGQLGYGTSNSASNYTPHIVEYLKGKTFTRVSAAKYHTVVLGADGEVYTWGHRLVTPRRVVITRNLKKSGSTPLKFHRTERLHVVSIAAGVTHSMATTDDGALFYWVSSDPDLRCQQLYTMCGRNMVSIAAGKYWASAVTATGDVYMWDGKKVKDKPLIATRLHGIKRATSVSVGETHLLIVASLYHPIYPPNMNKDSQNLKLDNRDEIEELNEDILFEDMEPNNMTSSIRRDNFGPRPIPSLKSLCEKVAADCLVEPRNAIQLLEIADSLGADDLRKYCEDIVLRNLDYVFMVSSQSMASASPDILANLEKSLDHRSSEPWSHRRFPTSTATFPVIINSEEDDSEMEFQRTRDKPMKMSELKLENDQRQDCFLQPKDDPNLLISKLVRALRKKLQQIEMLEAKQSNGYLLDDQQVAKIQSKSALESSLADLGVPVETSQNKELSSVLPDGKGSRKGNQSRKQRRKSKASAVQTEVDSVFTRTEIMPEPVEDLMGVEVTEVTVTKLEDAASEQITANERAKDSAFVVQKKDSLELLKNNGQSPEVSKKKSKKGALSMFLSGALDDAPKEVAPPRTKSEGPAWGGAKFSKSSASLRDIQDEQSKFKGNMVARNKDPPEDLSDGGSGGKILLGSFLPSSPIPVASTRTCQASDGDKSTPPWAASGTPPHLSRPSFRDIQMQQGKKQLNLSHSPKTSTAGFTIATGQGSPSEANGVNRWFKPEVETPSSIRSIQIEEKAMKDLKRFYSTVKVVKRES 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01984 1079 MobiDBLite consensus disorder prediction 761 800 - -
Bva04g01984 1079 Gene3D - 120 242 IPR009091 -
Bva04g01984 1079 SUPERFAMILY Ankyrin repeat 40 136 IPR036770 -
Bva04g01984 1079 MobiDBLite consensus disorder prediction 862 1040 - -
Bva04g01984 1079 MobiDBLite consensus disorder prediction 998 1036 - -
Bva04g01984 1079 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 154 205 IPR000408 -
Bva04g01984 1079 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 1078 - -
Bva04g01984 1079 Pfam Regulator of chromosome condensation (RCC1) repeat 155 202 IPR000408 -
Bva04g01984 1079 Pfam Regulator of chromosome condensation (RCC1) repeat 316 366 IPR000408 -
Bva04g01984 1079 Pfam Regulator of chromosome condensation (RCC1) repeat 206 260 IPR000408 -
Bva04g01984 1079 Pfam Regulator of chromosome condensation (RCC1) repeat 265 312 IPR000408 -
Bva04g01984 1079 MobiDBLite consensus disorder prediction 921 945 - -
Bva04g01984 1079 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 316 369 IPR000408 -
Bva04g01984 1079 Gene3D - 243 509 IPR009091 -
Bva04g01984 1079 ProSiteProfiles Ankyrin repeat profile. 96 128 IPR002110 GO:0005515
Bva04g01984 1079 Coils Coil 709 729 - -
Bva04g01984 1079 Coils Coil 520 540 - -
Bva04g01984 1079 Gene3D - 8 119 IPR036770 -
Bva04g01984 1079 Pfam Ankyrin repeats (3 copies) 41 127 IPR002110 GO:0005515
Bva04g01984 1079 SUPERFAMILY RCC1/BLIP-II 119 431 IPR009091 -
Bva04g01984 1079 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 206 264 IPR000408 -
Bva04g01984 1079 MobiDBLite consensus disorder prediction 962 982 - -
Bva04g01984 1079 SUPERFAMILY RCC1/BLIP-II 396 508 IPR009091 -
Bva04g01984 1079 CDD BACK 583 635 - -
Bva04g01984 1079 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 370 425 IPR000408 -
Bva04g01984 1079 ProSiteProfiles Ankyrin repeat region circular profile. 62 93 - -
Bva04g01984 1079 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 265 315 IPR000408 -
Bva04g01984 1079 SMART ANK_2a 62 91 IPR002110 GO:0005515
Bva04g01984 1079 SMART ANK_2a 25 58 IPR002110 GO:0005515
Bva04g01984 1079 SMART ANK_2a 96 125 IPR002110 GO:0005515
Bva04g01984 1079 ProSiteProfiles Ankyrin repeat region circular profile. 96 127 - -
Bva04g01984 1079 ProSiteProfiles Ankyrin repeat profile. 62 94 IPR002110 GO:0005515
Bva04g01984 1079 PANTHER ANKYRIN REPEAT FAMILY PROTEIN / REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 1 1078 - -
Bva04g01984 1079 PRINTS Chromosome condensation regulator RCC1 signature 318 332 IPR000408 -
Bva04g01984 1079 PRINTS Chromosome condensation regulator RCC1 signature 302 318 IPR000408 -
Bva04g01984 1079 PRINTS Chromosome condensation regulator RCC1 signature 155 171 IPR000408 -
Bva04g01984 1079 PRINTS Chromosome condensation regulator RCC1 signature 208 224 IPR000408 -
Bva04g01984 1079 PRINTS Chromosome condensation regulator RCC1 signature 265 281 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01984 Bva-Chr4 19837174 19844898 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01984 35 136 Acyl Lipid Metabolism Gene Families AT5G53470 34.314 3.01e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01984 K24810 - gmx:100800604 1710.27