Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01950 ATGACCAGGATTAGGTCTAACCTATCTGTTTTCTCTGCTGTGCTACGCATCCACCAGAATTTCCTCCCTCGTAATCGCGCCCGTATGGTTGAGCAGCCCATAGCTGCTTGTTTCAATAAGCCTTGtttttttgagaatttatCTGCTCCGCCAAAATTTGGATTCtcaatccttttcttttcttcttcatctccaACAACGACAAACTTCAGAGTGTTAACTGACACTTCTACACCAGGGTTGGATCAGGCGTCAAgtgataatgatgatgatgatgaggaagAGGATGAGGAGCATGACCAGAATGATGATAAGAAGGATAGCTGTTTTGGTGAGTTAGAATTAAGAGATGATAGTCTTGCCCAAGATGTCAAAACCATTTTGGATATAATGCATGAGCCTGGGTGCAGTCTAACAGAAATCAAATACAAGCTTGAGCATTGCAGTATTACAGTATCAGCAGAGTTGGTTGCGGAGGTTCTTTCAAGAATTCGAAATGATTGGGGAGCAGCTTTCACCTTTTTCCTGTGGGCTGGCAAGCAACCAGGTTATGCTCATTCAGTCCGCGAGTACCATTCTATGATCTCTATCCTTGCCAAAATGAGGAAGTTTGATACTGCTTGGGCCTTAATTGAGGAAATGAGAGGAGGTAAAACCCAACCATCTCTTGTCACCCCTCAAACTCTCTTGATCATGATCAGGAGATACTGTGCTGTACATGATGTTGGAAGGGCCATAAACACGTTCTATGCTTTTAAACGGTTTAACTTTCAACTTGGATTAGAGGAATTTCAGAGTCTTCTTTCTGCCCTTTGCCGATACAAGAATGTGCAAGATGCTGAGCATTTACTCTTCTGCAACAAAAATGTATTCCCATTTCACACCAAAAGCTTTAACATTGTTTTGAATGGATGGGGTAATGTGATTGGTAGCACAAGTCAAGCAGAGAGAATTTGGCAGGAGATGAGCAAAAGAGGAATACAATATGATGTTGTCTCTTATGCAAGCATCATATCTTGCTATTCAAAATCTTCAATGCTTTACAAGGTTCTCAGGCTGTATGAccagatgaagaaaatgaagatcaCACCAGATAGGAGGGTTTATAATGCGGTAATTCATGCTCTTGCCAAAGGTAGGCTTGTTAAAGAAGCTGTTAACGTCGTGATAACAATGGAAGACAACAGAGTTGCTCCCGATGTTGTTACTTACAACTCACTGATCAAGCCTCTTTGCAAAGCTCGTAAAATTGACGAGGCCAAAGAAATCTTAGATGACATGTTGCAGCGTGGCCTGTCCCCTACTATTCGGACTTATCATGCATTCTTTCGAATTTTAAGAACCGAGGAAGAAGTATTTGTGTTTTTGAACAAGATGAGAAAGTTGGGCTGCCACCCAACTATTGAGACTTACATAATGctgataagaaaattttgcagaTGGCGTAAGCTTGATATGGTTTATAAGTTATGGAGTGAGATGAGTGAAAGTGGAGTCAGCCCTGATCGTAGCTCATATATCGTGCTGATTCACGGGCTGTTTCTGAATGGGAAGTTGGAAGAagcatataaatattatatagagATGCAGGAGAAAGGCTTTCTACCAGAACCAAAAACGGATGAAATGCTTCAGGCTTGGGTTTCTGCGAGGCATGCATCAGAGGGCCAAATGACAGAATCAGAGTGCAATCAATTGAAAGATTGTactttgagaaagaaagacaagacTTTCCCCAGTAAATTTCATCGAGAAAAAGATTTTCTTCGCCAACCTGAGAccagaaaagtaaaaagagaGCGAGGGTTTTCTTTCTCGGAAGACTA 1826 0.3817 MTRIRSNLSVFSAVLRIHQNFLPRNRARMVEQPIAACFNKPCFFENLSAPPKFGFSILFFSSSSPTTTNFRVLTDTSTPGLDQASSDNDDDDEEEDEEHDQNDDKKDSCFGELELRDDSLAQDVKTILDIMHEPGCSLTEIKYKLEHCSITVSAELVAEVLSRIRNDWGAAFTFFLWAGKQPGYAHSVREYHSMISILAKMRKFDTAWALIEEMRGGKTQPSLVTPQTLLIMIRRYCAVHDVGRAINTFYAFKRFNFQLGLEEFQSLLSALCRYKNVQDAEHLLFCNKNVFPFHTKSFNIVLNGWGNVIGSTSQAERIWQEMSKRGIQYDVVSYASIISCYSKSSMLYKVLRLYDQMKKMKITPDRRVYNAVIHALAKGRLVKEAVNVVITMEDNRVAPDVVTYNSLIKPLCKARKIDEAKEILDDMLQRGLSPTIRTYHAFFRILRTEEEVFVFLNKMRKLGCHPTIETYIMLIRKFCRWRKLDMVYKLWSEMSESGVSPDRSSYIVLIHGLFLNGKLEEAYKYYIEMQEKGFLPEPKTDEMLQAWVSARHASEGQMTESECNQLKDCTLRKKDKTFPSKFHREKDFLRQPETRKVKRERGFSFSED 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01950 608 Pfam PPR repeat family 399 443 IPR002885 -
Bva04g01950 608 Pfam PPR repeat family 474 513 IPR002885 -
Bva04g01950 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 467 501 IPR002885 -
Bva04g01950 608 MobiDBLite consensus disorder prediction 584 608 - -
Bva04g01950 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 329 IPR002885 -
Bva04g01950 608 Pfam PPR repeat 191 215 IPR002885 -
Bva04g01950 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Bva04g01950 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Bva04g01950 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 502 536 IPR002885 -
Bva04g01950 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Bva04g01950 608 TIGRFAM PPR: pentatricopeptide repeat domain 470 502 IPR002885 -
Bva04g01950 608 TIGRFAM PPR: pentatricopeptide repeat domain 505 536 IPR002885 -
Bva04g01950 608 TIGRFAM PPR: pentatricopeptide repeat domain 191 221 IPR002885 -
Bva04g01950 608 TIGRFAM PPR: pentatricopeptide repeat domain 368 401 IPR002885 -
Bva04g01950 608 TIGRFAM PPR: pentatricopeptide repeat domain 402 435 IPR002885 -
Bva04g01950 608 TIGRFAM PPR: pentatricopeptide repeat domain 332 365 IPR002885 -
Bva04g01950 608 Gene3D Tetratricopeptide repeat domain 137 287 IPR011990 GO:0005515
Bva04g01950 608 Gene3D Tetratricopeptide repeat domain 288 450 IPR011990 GO:0005515
Bva04g01950 608 Gene3D Tetratricopeptide repeat domain 451 591 IPR011990 GO:0005515
Bva04g01950 608 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 70 598 - -
Bva04g01950 608 Pfam Pentatricopeptide repeat domain 317 376 IPR002885 -
Bva04g01950 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Bva04g01950 608 MobiDBLite consensus disorder prediction 85 101 - -
Bva04g01950 608 PANTHER OS01G0816000 PROTEIN 70 598 - -
Bva04g01950 608 MobiDBLite consensus disorder prediction 71 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01950 Bva-Chr4 19659479 19662271 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01950 240 562 Glycosyltransferase AT1G05670 23.780 3.54e-26 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01950 - - gmx:100812155 810.831