Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01939 ATGGTTGCATGCCTTTCATGCACCCCTGAAACTTTGTGCTGTGTTAGAACCCCACGTTTTGGTTCAAATGAAGCTCTAATCTTTCTCCAAAAGTGCAGTAATTTCAAGCAGCTCAAGCAAATTCATGGGAAAATGTTCCGATTCGGTATCTCCGGTGACCAGTTGCTTATCAGGAAGCTCGTTCACCTCTGTTCCTCTTATGGGCAAATGGACTATGCCACTCTTGTATTTCATCAATTGAATGCCCCGGATACCTTTACTTGGAATGTCATGATTAGGGAATATACTATCAGTGGCTCCCCTGAACAGGCCATTGTTCTGTTTGAGCTTATGCTATGCTATGGCTTTCCACCTGATAAATTCACCTTCCCATTTGTTATAAATGCTTGTAGGGCTTATTCTGCCCTTGATTTTGGAAAAATGACCCATGCTTTAGCAATCAAGAGTGCGTTCTCGAGTGATATATATGTGCAAAACACACTGATGGATCTTTATTTCAAGTGTGAAGATTCAGATTATGGGTGGAACGAGGTCATTGGTATTGCTGAtataaaggaaattattcaCAGACATTATGGGGACTCTGGGTATTTGTCTTCGAGCTCCTGCGTTGAGTTTACCAATCGAGGGTGGTGTCTGTGTATTGTGACTCTGCTGTTCGGGGTGGCCTTTGTGAAGCTCCAGCGGTATTTGTGTTTGATCTCTAGTCGAAGGTTAAATTCATTGCTGAAGCATTCCATTCCTTTCTCGTGGAATAGTAGTATCTTCGGTAGGAGGAAATTGATAGGGGTGAGTGACGCCATGCCTTCGAATCTGACGACATCTACGAATCCCTTACGCCATGTGGAATCAATGAAGCATCCGCAATCTGTTGCAGGAGGCAACATTTCCAAGTTGAACGCTGTGACACTGGGTGAAGCTCCCGCTTCTGAAGAGAATGCTTTGGTCCTTCCAAACAAGGAGTTCTCCTCCAAAGCACATGTTCAATCCCCAGAACAGTATCTGGAGATGTATAAGAGGTCGATAGAGGACCCAGCTGGATTTTGGTCCGATATTGCATCAGAGTTTTATTGGAAGCAGAAATGGAGTGATAAAGTTTGcgatgaaaattttgatgttaGAAAAGGCCGTATCAAGATTGAGTGGTTCAAGGGTGGCATCACCAACATCTGTTATAATTGTTTGGATAGAAATATTGAAGCTGGACTAGGTGACAAAGTCGCCATTTTATGGGAAGGCAATGAGCCTGGTATGGATGGCACTTTGACATACAATCAGCTTCTGCATCAAGTTTGCCAGGTTGCAAACTACCTGAAAGATATTGGTGTGAAGAAGGGAGATgctgtaattatttatttgccCATGCTAATGGAGCTTCCCATCACAATGCTTGCCTGTGCCCGCATTGGTGCTGTTCATTCGGTTGTGTTTGCCGGTTTTTCTGCAGAATCTCTTGCCCAAAGAATCATTGATTGTAAGCCAAAGGTTGTGATTACTTGCAATGCTGTTAAAAGGGGTCCAAAGACCATCAACCTCAAAGACATAGTTGACACTGCCATCTACCAATCAGCCCAAAATGGAGTCTCTATAGATGTGTGCTTAACTTATGATAACCCAGTGGCAATGAAGAGGGAAGATACTAAGTGGCAGGAAGGGCGAGATATTTGGTGGCAGGATGTCATTCCTCGATATCCAACTACTTGTCCAGTGGAGTGGGTTGATGCAGAGGATCCACTTTTTCTACTCTATACAAGTGGGAGTACGGGAAAACCAAAGGGTGTACTTCATACAACTGGTGGTTACATGGTATATACTGCAACAACATTCAAATATGCATTTGACTATAAACCATCGGATGTCTACTGGTGTACTGCCGACTGTGGTTGGATTACTGGGCACAGCTATGTCACTTATGGGCCCATGCTCAATGGTGCAACTGTGCTTGTGTTTGAAGGGGTTCCCAATTATCCTGATCCTGGGCGCTCTTGGGACATTGTTGACAAATACAAGGTGACAATATTTTACACTGCCCCCACATTGGTGCGGTCACTTATGCGTGATGGTGATGAGAATGTTACCCGCTACTCAAGGAAATCTTTACGTGTCCTGGGAAGTGTAGGCGAGCCCATAAATCCAAGTGCATGGAGGTGGTTCTTCAATGTAGTTGGAGATTCAACATGCCCAATATCTGACACTTGGTGGCAAACAGAAACTGGTGGCTTCATGATAACTCCACTACCTGGTGCTTGGCCGCAGAAGCCTGGTTCTGCTACATTGCCTTTCTTTGGAGTTCAGCCTATCATAGTGAATGAGAAAGGTGTTGAACTAGAGGGTGAGTGCAGCGGTTATCTGTGCATTAAAAAATCGTGGCCTGGGGCATTCAGAACTCTTTATGGTGATCATGAAAGATATGAAACAACATACTTCAAGCCATTTCCTGGCTACTATTTCAGTGGTGATGGCTGCAGGCGGGATAAAGATGGATACCATTGGCTCACTGGAAGAGTTGATGATGTCATCAATGTCAGCGGACATCGTATTGGAACAGCTGAAGTGGAATCAGCTCTTGTTTCACACCCTCAATGTGCAGAAGCTGCCGTAGTTGGAATTGAGCATGAGGTTAAAGGTCAAGGTATCTATGCTTTTGTTACTCTTGTGGACGGTGTTCCTTACAGTGAAGAACTGCGGAAGAGCCTTATACTCGCAGTTCGAAACCAGATAGGAGCCTTCGCAGCACCTTACAAAATCCATTGGGCACCTGGCCTTCCAAAAACTAGGAGTGGAAAGATAATGAGAAGAATTCTGAGAAAAATTGCTTCAAGGCAGTTGGATGAGCTTGGAGATACAAGCACCCTTGCAGATCCAAGTGTGGTCAAACAACTTATAGAACTTGCTGATTGCTG 2903 0.4371 MVACLSCTPETLCCVRTPRFGSNEALIFLQKCSNFKQLKQIHGKMFRFGISGDQLLIRKLVHLCSSYGQMDYATLVFHQLNAPDTFTWNVMIREYTISGSPEQAIVLFELMLCYGFPPDKFTFPFVINACRAYSALDFGKMTHALAIKSAFSSDIYVQNTLMDLYFKCEDSDYGWNEVIGIADIKEIIHRHYGDSGYLSSSSCVEFTNRGWCLCIVTLLFGVAFVKLQRYLCLISSRRLNSLLKHSIPFSWNSSIFGRRKLIGVSDAMPSNLTTSTNPLRHVESMKHPQSVAGGNISKLNAVTLGEAPASEENALVLPNKEFSSKAHVQSPEQYLEMYKRSIEDPAGFWSDIASEFYWKQKWSDKVCDENFDVRKGRIKIEWFKGGITNICYNCLDRNIEAGLGDKVAILWEGNEPGMDGTLTYNQLLHQVCQVANYLKDIGVKKGDAVIIYLPMLMELPITMLACARIGAVHSVVFAGFSAESLAQRIIDCKPKVVITCNAVKRGPKTINLKDIVDTAIYQSAQNGVSIDVCLTYDNPVAMKREDTKWQEGRDIWWQDVIPRYPTTCPVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGVPNYPDPGRSWDIVDKYKVTIFYTAPTLVRSLMRDGDENVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSTCPISDTWWQTETGGFMITPLPGAWPQKPGSATLPFFGVQPIIVNEKGVELEGECSGYLCIKKSWPGAFRTLYGDHERYETTYFKPFPGYYFSGDGCRRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVDGVPYSEELRKSLILAVRNQIGAFAAPYKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPSVVKQLIELADC 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01939 967 Gene3D - 313 837 IPR042099 -
Bva04g01939 967 Pfam AMP-binding enzyme C-terminal domain 851 929 IPR025110 -
Bva04g01939 967 CDD ACS 332 954 - -
Bva04g01939 967 Gene3D Tetratricopeptide repeat domain 22 193 IPR011990 GO:0005515
Bva04g01939 967 Pfam AMP-binding enzyme 404 842 IPR000873 -
Bva04g01939 967 PANTHER ACETYL-COENZYME A SYNTHETASE 288 966 - -
Bva04g01939 967 TIGRFAM Ac_CoA_lig_AcsA: acetate--CoA ligase 329 963 IPR011904 GO:0003987|GO:0016208|GO:0019427
Bva04g01939 967 Pfam Acetyl-coenzyme A synthetase N-terminus 334 394 IPR032387 -
Bva04g01939 967 TIGRFAM PPR: pentatricopeptide repeat domain 86 119 IPR002885 -
Bva04g01939 967 Hamap Acetyl-coenzyme A synthetase [acs]. 311 965 IPR011904 GO:0003987|GO:0016208|GO:0019427
Bva04g01939 967 Pfam PPR repeat family 83 130 IPR002885 -
Bva04g01939 967 ProSitePatterns Putative AMP-binding domain signature. 581 592 IPR020845 -
Bva04g01939 967 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 84 118 IPR002885 -
Bva04g01939 967 SUPERFAMILY Acetyl-CoA synthetase-like 321 962 - -
Bva04g01939 967 PANTHER ACETYL-COENZYME A SYNTHETASE 288 966 - -
Bva04g01939 967 Gene3D - 838 966 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01939 Bva-Chr4 19590049 19601106 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01939 275 966 Acyl Lipid Metabolism Gene Families AT5G36880 84.393 0.0 1238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01939 K01895 - gmx:100808939 1295.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01939 04 19590049 19601106 Bva04g01939 04 19590049 19601106 ECH