Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01935 ATGGCTTCTCCTCTTTGGACTCTCTTTCTAGTCTCACTCTCATTGGCCTCTGTTGCCCTAGCCGCTGTCCCACGGCGGCCCGTCGATGTTCCATTCGGCCGAAACTACGTTCCTAGCTGGGCTTTTGATCACATCAAGTACTTTAATGGTGGTACTGAGATTCAGCTTCATCTCGACAAGTACAGTGGGACCGGTTTCCAGTCCAAAGGATCTTACTTGTTTGGTCACTTCAGCATGTACATAAAGATGGTTCCTGGTGATTCAGCTGGCACCGTCACTGCTTTCTATTTATCTTCCCAAACCTCGGAACACGATGAAATAGACTTTGAGTTCTTGGGGAACAGAACAGGGCAACCTTACATTTTGCAAACAAACGTGTTCACCGGAGGAAAGGGTGACAGAGAACAGAGAATCTACCTCTGGTTTGATCCTACAATGGCCTATCACAGATACTCTGTTCTGTGGACTGTAGATCAGATTGTGTTCTTCGTGGATGACGTCCCAATCAGAGTGTTCAAGAACTGCAAGGACTTGGGAGTGAAATTCCCATTCAACCAGCCAATGAAAATGTACAACAGCCTGTGGAATGCGGATGACTGGGCCACACGGGGTGGGTTGGAGAAGACAGACTGGTCGAAAGCTCCCTTCATAGCCCACTACAAGGGCTTCCACATCGATGGGTGCGAAGCTTCGGTGAATGCCAAGTTCTGCGACACTCAGGGGAAGAGATGGTGGGATCAGCCAGAGTTCAAGGACCTCGACGCAGCTCAATGGCAGAGACTCAGGTGGGTTCGCCAGAAATACACCATCTACAACTACTGCACTGACCGCGTCCGCTACCCACAGCTACCCCCAGAATGCAAGCGCGACCGAGACATTTA 881 0.5006 MASPLWTLFLVSLSLASVALAAVPRRPVDVPFGRNYVPSWAFDHIKYFNGGTEIQLHLDKYSGTGFQSKGSYLFGHFSMYIKMVPGDSAGTVTAFYLSSQTSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTMAYHRYSVLWTVDQIVFFVDDVPIRVFKNCKDLGVKFPFNQPMKMYNSLWNADDWATRGGLEKTDWSKAPFIAHYKGFHIDGCEASVNAKFCDTQGKRWWDQPEFKDLDAAQWQRLRWVRQKYTIYNYCTDRVRYPQLPPECKRDRDI 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01935 293 Gene3D - 17 293 - -
Bva04g01935 293 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 16 220 IPR000757 GO:0004553|GO:0005975
Bva04g01935 293 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3 291 - -
Bva04g01935 293 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 291 IPR013320 -
Bva04g01935 293 CDD GH16_XET 27 287 IPR016455 GO:0010411|GO:0016762|GO:0042546
Bva04g01935 293 PIRSF EndGlu_transf 2 292 IPR016455 GO:0010411|GO:0016762|GO:0042546
Bva04g01935 293 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 240 287 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Bva04g01935 293 ProSitePatterns Glycosyl hydrolases family 16 active sites. 106 116 IPR008263 GO:0004553|GO:0005975
Bva04g01935 293 Pfam Glycosyl hydrolases family 16 33 213 IPR000757 GO:0004553|GO:0005975
Bva04g01935 293 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 3 291 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01935 Bva-Chr4 19576184 19577998 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01935 7 293 Glycoside Hydrolase AT5G13870 79.791 1.24e-180 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01935 K08235 - gmx:547775 545.814