Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01928 ATGCCAATCTTGAGAGACGCAACAGTGGCAGTGGTCTCGGAACCACCGGCAACGCCGTCTGTGGAGGGCGAAGATGATTATGATGCTTCCACCTGCGTCGTTTTGCTGGACGAGGAGGGTTTTCCATCACAAGCCGTAGACGAGGATAATGAACAGAACGAAAGCGACGACGGATTGAAAATGGTATCAGGGAAAAGCAGTTTCGCTGCCGATTTCTATCAATGCGGCACTGATTGGTCTTGCTTGTTATCAGCAGAAGATTGCAGTAGTAGCATAGGCATTAAGAGAAGGGATTTCGTAGGCGACCCAATAGCTTCGGGAAGGAAGTTGAAACAGGTTAATCTATTTCAGATGTGGGGCTTCAAAAAAAATGGTACCGATGAATCCGTTACTCCTTCCTCTATTAATTCGAAATTGAATCAAAGTGTTTATTATGACGACGGAAATGAGGATGGCTTTCCTTTCAACAAGAAGACTGCTAAGCTTGAAAATTGGGGCTCAATTTCACGTAATACCCAGACAGATTTTGAAAAGTCAAAGCCTTCACGTAAGAGAAAGAACAGCTACAATGATAATTTGGGGTCGCGTGCGTGCCCCTCCTATAAGAAAATTGCAGGTACGACCTTTACTGTTGATGCATTTCGCTATGGGTGCATTCCAGGATGCACAGCATATTTCCTTAGCCACTTCCATTGCGATCATTATGGCGGTCTTAGCAAAAAATGGTCAAATGGCCCTATTTATTGCAGTCCTCTCACAGCTCGTCTTGTTCAAATTTGTCTCTCGGTAAATCCGCTGTATATCCACCCTTTGGAATTGAATACTGAATATGTAATTGATGGTGTCAAAGTGACACTGCTAGAAGCTAATCATTGCCCTGGTGCAGCTTTGATTCACTTTCATCTCCCAAATGGGCAATGCTTTTTACATACGGGGGATTTCAGAGCTTCTAAATTTATGCAAGCTTACTCCCTTCTCGTAAATCAACATGTGAATGTGCTTTATTTGGATACAACGTATTGCAACCCAAAGTACAAGTTCCCTTCTAAGGAAGATGTACTGAACTATGTTgtcaaaattacaaagaacCACCTCAACATGCAGCCCAGAACTTTAGTGGTTGTTGGGGCATATAGTATTGGAAAAGAATGTGTTTATCTTGCAATTTCTAAGGCACTGGGGGTAAAAATTCATGCAAATGCTTCAAGAAGACGAATTTTACTAGCTTTTGGTTGGCCTGAGCTTTCGGATAGCCTCTGTACAAATGAAAAGGACACGCTTCTTCATGTTCTGCCCATGTCATCTCTGAGATTTGAGATCTTGATGGATTACTTGAAGTCCTACGAGGAAAAATTCGCTGCAGTGTTGGCATTTCGTCCAACAGGTTGGACTTTCAGTGAGAAGATAGGCAATCATCTGGAATTAATTAAACCCATTTCCAAAGGCAACGTCACGATATATGGGGTTCCTTACAGTGAACACTCCAGCTTCACAGAACTGCGTGAGTTTGTTCAGTTTTTGAGGCCTGACAAGATCATTCCAACCGTGAACGTTTGGAGAGCAGCAAATCGAGAAAAGATGCAGTCCTACTTCCGAGGATGGTTGAAAGGCTA 1613 0.4259 MPILRDATVAVVSEPPATPSVEGEDDYDASTCVVLLDEEGFPSQAVDEDNEQNESDDGLKMVSGKSSFAADFYQCGTDWSCLLSAEDCSSSIGIKRRDFVGDPIASGRKLKQVNLFQMWGFKKNGTDESVTPSSINSKLNQSVYYDDGNEDGFPFNKKTAKLENWGSISRNTQTDFEKSKPSRKRKNSYNDNLGSRACPSYKKIAGTTFTVDAFRYGCIPGCTAYFLSHFHCDHYGGLSKKWSNGPIYCSPLTARLVQICLSVNPLYIHPLELNTEYVIDGVKVTLLEANHCPGAALIHFHLPNGQCFLHTGDFRASKFMQAYSLLVNQHVNVLYLDTTYCNPKYKFPSKEDVLNYVVKITKNHLNMQPRTLVVVGAYSIGKECVYLAISKALGVKIHANASRRRILLAFGWPELSDSLCTNEKDTLLHVLPMSSLRFEILMDYLKSYEEKFAAVLAFRPTGWTFSEKIGNHLELIKPISKGNVTIYGVPYSEHSSFTELREFVQFLRPDKIIPTVNVWRAANREKMQSYFRGWLKG 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01928 537 CDD SNM1A-1C-like_MBL-fold 195 343 - -
Bva04g01928 537 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 92 536 - -
Bva04g01928 537 Gene3D - 346 494 - -
Bva04g01928 537 Pfam DNA repair metallo-beta-lactamase 414 518 IPR011084 -
Bva04g01928 537 Gene3D - 205 516 IPR036866 -
Bva04g01928 537 SUPERFAMILY Metallo-hydrolase/oxidoreductase 221 516 IPR036866 -
Bva04g01928 537 SMART Lactamase_B_5a 197 345 IPR001279 -
Bva04g01928 537 PANTHER DNA CROSS-LINK REPAIR PROTEIN SNM1 92 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01928 Bva-Chr4 19537047 19542684 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01928 K15340 - gmx:100790844 708.753