Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01919 ATGATGTGTGAGCCCGAGCCAGACGTTTATATGCCCCTTACTGCTTCTCAACCTCAATCCAACCCCAATTTCATCCTCACGCCTGAAAAAATATCTAGCCGCTATAGGCCAAAACTTGCTCGAAGAATGGAGACAGATGAGTGCTtcaaatgcaagaaaaagGGTCATTGGATGGTAGATTGCCCTCTAAATTCCCCTGATGCTGATTACACCAAGATACATTGCCGGTGTGGTCATGGGTTTTGCGAAGTAAAAACAGCCAGGAACAACCGGAACAACGGCCGGAAGTATTATGCCTGCCCAATCAAAAGGgggAAAAGATGTGGAGAATTCGTTAGATGGTGTGATGATCCCGTCAGGGAGAATGATCTCCATCCTCCGCCGTACAAGTATCCGGAATGTGCCAGGTGCGGTGCCGGAGTatgcaaaaaggaaaaagagatgaGTGGCCCAAATGCGGGTCGCTATTACTTTTCTTGCCCTGTGGGAGAGGGTTTTGGATCTTGTGGTTTCATTACGTGGGAGGATACTCTGCTGAATAGCACCAGCATAGTTCCTGTGCAGCGAAGCATTCAGAAAAATCTTCATGACTATTGGGATCAAATTAAAACGACTAACAACAATGATAAGGAAGAAGGAAGTGAATTAAATTTAGGGGATTCCAAAAGGATGAGGATCATGGACAATTCTCAGTGTCCCCCAATTATAGCTTCGTCTCACCTTCCAGAAAGAGAGGATACATCCCAAAAGGAAGCTACGATGGAGAGAGGGAAACAAGATGAAACAGCGGCATTATCATCCCCTGCAAATCATGTTGCTTTTCCAGGTTTTGAGTTTCCTAATGATATCCAGGATCTATGTATGCCTGGCTCCAGGTCATCGGATAGCATTGTGGAGGAGGCATGTCATCTGGTCATGATTCGTTGTCGACAGAGAGAGTTTGAGAGGCAGTTCTCTGctgctgcttcttcttttggaATTCCGGTGGCAGATCTTTGTTTCATGGGTTGGTTAGGTCGTCTCCTTTTCTTCCATCCAACTCAAAGCTTAAAATATCCCTTACCTCAGCCATTTTATTGCTGTGTTTTCCCATCTTTTGACGCGATTATTATTCCTGAACGAAAGAGTACTCGTAATAGTTTCTCTGCTGATTCTAACCATCTTGTAGTAAGCATCTCAGGTCTACATCGGCAACTTCCAACTGAGGTTTCAAGAGATGAAGTTGCTTTTCATAGATCAGCAGGCAGTGAAAGAAAGCTGATGTCCAAGTTAGAAAGGcaaagaaaaatggcattAATTGCGCAACAGCTTCTTGTTGAACTTGAGACCTTGAATCCTCTTGATCACGCGTCCATGAGGGAGGCAGCAGAGGCTACTTTTGATGTCCTTGATTGTTTATCAGTTGACTACAAAGGTTTTTCTGAGCATGTGTGGGAATTCATCAATCATTCATCATCCTTAGCTGAAATCCAAAAATCCATTGAAAATTCCCCTTCTCCTGAAGAACACAAGAATCTCTACgaggaagagaaagtgagACTTGATAGCATCCGTGACAACTACGCGAAGACTAAGGCCTCGCTTGTATCATCTTGCCAGCGTAGTAAATCACTCCGTGAGGAGGCCTCTCGTCTCAAGGCCATGCTTTATCAGGTTGAAAGCCACCTAACCTGCTGCCAGACAGAGACTTTGAATATTCAGAATGATCTTGAAAACATAAATACATGTATGTTGGAGGCTGAAAGAAGCTTGCAGGTTGCAGCTGAGCAAGCAGAAGCAGCAAGGAAACTTGGGGAGGAGAGAAGGGGGAAGGAAATTGCAGCAAAGGCAGCACTGCATAAAGCCAAACTTGAACTAGAAAACTA 1865 0.4247 MMCEPEPDVYMPLTASQPQSNPNFILTPEKISSRYRPKLARRMETDECFKCKKKGHWMVDCPLNSPDADYTKIHCRCGHGFCEVKTARNNRNNGRKYYACPIKRGKRCGEFVRWCDDPVRENDLHPPPYKYPECARCGAGVCKKEKEMSGPNAGRYYFSCPVGEGFGSCGFITWEDTLLNSTSIVPVQRSIQKNLHDYWDQIKTTNNNDKEEGSELNLGDSKRMRIMDNSQCPPIIASSHLPEREDTSQKEATMERGKQDETAALSSPANHVAFPGFEFPNDIQDLCMPGSRSSDSIVEEACHLVMIRCRQREFERQFSAAASSFGIPVADLCFMGWLGRLLFFHPTQSLKYPLPQPFYCCVFPSFDAIIIPERKSTRNSFSADSNHLVVSISGLHRQLPTEVSRDEVAFHRSAGSERKLMSKLERQRKMALIAQQLLVELETLNPLDHASMREAAEATFDVLDCLSVDYKGFSEHVWEFINHSSSLAEIQKSIENSPSPEEHKNLYEEEKVRLDSIRDNYAKTKASLVSSCQRSKSLREEASRLKAMLYQVESHLTCCQTETLNIQNDLENINTCMLEAERSLQVAAEQAEAARKLGEERRGKEIAAKAALHKAKLELEN 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01919 621 Gene3D - 28 71 - -
Bva04g01919 621 MobiDBLite consensus disorder prediction 243 258 - -
Bva04g01919 621 PANTHER OS07G0190500 PROTEIN 128 621 - -
Bva04g01919 621 PANTHER OS07G0190500 PROTEIN 16 124 - -
Bva04g01919 621 Pfam Zinc knuckle 47 62 IPR001878 GO:0003676|GO:0008270
Bva04g01919 621 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 128 621 - -
Bva04g01919 621 MobiDBLite consensus disorder prediction 235 264 - -
Bva04g01919 621 Coils Coil 577 597 - -
Bva04g01919 621 Pfam GRF zinc finger 74 117 IPR010666 GO:0008270
Bva04g01919 621 Pfam GRF zinc finger 133 177 IPR010666 GO:0008270
Bva04g01919 621 SUPERFAMILY Retrovirus zinc finger-like domains 40 66 IPR036875 GO:0003676|GO:0008270
Bva04g01919 621 ProSiteProfiles Zinc finger CCHC-type profile. 48 62 IPR001878 GO:0003676|GO:0008270
Bva04g01919 621 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 16 124 - -
Bva04g01919 621 SMART c2hcfinal6 47 63 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01919 Bva-Chr4 19495452 19501263 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01919 - - vra:106766599 415.231