Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01173 ATGGCTCCTCCAAGAGGTCGTGGTGGACGTGGTGGTGGCGGGGGTGGTGGACGAGGAGGCAGGGGAGGTCGTggaggaagaggaggaggagacAGACCTGGTGGTAGTGCTATGAAACGTGGTGGCGGACGAGGAGGCAGGGGAGGTCGTGGAGGAGGCAGAGGAGGAGGAATGGGAGGGATGAAAGGAGGGAGCAAGGTTGTGGTTGAGCCTCACAGGCATGAAGGGATATTCATTGCTAAGGGTAAAGAAGATGCCCTTGTGACTAAGAATCTAGTTCCCGGGGAAGCTGTGTACAATGAGAAGAGGATCTCTGTGCAGAATGAGGATGGTTCCAAAGTTGAGTATAGGGTTTGGAACCCTTTTCGCTCAAAGTTGGCTGCTGCCATTCTGGGTGGTGTTGATAACATACATATtAAACCTGGTGCCAAAGTCCTTTACCTAGGAGCTGCTTCTGGTACCACTGTTTCTCATGTGTCTGACATTGTTGGTCCGACAGGGGTGGTCTATGCAGTAGAGTTCTCTCATAGAAGTGGTCGCGATTTGGTTAACATGGCAAAGAAGCGTACCAATGTTATACCCATTATTGAGGATGCTAGGCATCCTGCAAAATACAGGATGTTGGTTGGCATGGTAGATGTGATATTTTCTGATGTTGCTCAGCCTGATCAGGCAAGGATTCTAGCACTGAATGCTTCATATTATCTAAAAGCAGGAggtctttttgttatttccatTAAGGCTAATTGCATAGACTCCACAGTCCCGGCAAGTGCTGTCTTTGTTAGTGAAGTGAACAAGCTACGTGCAGAACAATTTAAACCTTCTGAGCAAGTCACCCTTGAACCATTTGAACGGGACCATGCATGTGTGGTTGGTGGATACAGAATGcctaagaagaagaaagatgctGAGTA 917 0.4547 MAPPRGRGGRGGGGGGGRGGRGGRGGRGGGDRPGGSAMKRGGGRGGRGGRGGGRGGGMGGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGSKVEYRVWNPFRSKLAAAILGGVDNIHIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYYLKAGGLFVISIKANCIDSTVPASAVFVSEVNKLRAEQFKPSEQVTLEPFERDHACVVGGYRMPKKKKDAE 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01173 305 Hamap Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase [flpA]. 83 296 IPR000692 GO:0003723|GO:0006364|GO:0008168
Bva04g01173 305 PANTHER RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN 7 304 - -
Bva04g01173 305 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 69 296 IPR029063 -
Bva04g01173 305 Gene3D Phosphorylase Kinase; domain 1 64 119 - -
Bva04g01173 305 PIRSF Nop17p 16 299 IPR000692 GO:0003723|GO:0006364|GO:0008168
Bva04g01173 305 SMART Fibrillarin_2 69 297 IPR000692 GO:0003723|GO:0006364|GO:0008168
Bva04g01173 305 PANTHER FIBRILLARIN, S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 7 304 - -
Bva04g01173 305 PRINTS Fibrillarin signature 274 295 IPR000692 GO:0003723|GO:0006364|GO:0008168
Bva04g01173 305 PRINTS Fibrillarin signature 115 134 IPR000692 GO:0003723|GO:0006364|GO:0008168
Bva04g01173 305 PRINTS Fibrillarin signature 192 221 IPR000692 GO:0003723|GO:0006364|GO:0008168
Bva04g01173 305 PRINTS Fibrillarin signature 222 251 IPR000692 GO:0003723|GO:0006364|GO:0008168
Bva04g01173 305 PRINTS Fibrillarin signature 167 184 IPR000692 GO:0003723|GO:0006364|GO:0008168
Bva04g01173 305 PRINTS Fibrillarin signature 142 163 IPR000692 GO:0003723|GO:0006364|GO:0008168
Bva04g01173 305 PRINTS Fibrillarin signature 87 106 IPR000692 GO:0003723|GO:0006364|GO:0008168
Bva04g01173 305 Gene3D Vaccinia Virus protein VP39 120 297 IPR029063 -
Bva04g01173 305 Pfam Fibrillarin 69 296 IPR000692 GO:0003723|GO:0006364|GO:0008168
Bva04g01173 305 MobiDBLite consensus disorder prediction 1 66 - -
Bva04g01173 305 ProSitePatterns Fibrillarin signature. 167 181 IPR020813 GO:0003723|GO:0006364|GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01173 Bva-Chr4 7980984 7983930 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01173 K14563 - gmx:100789137 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01173 04 7980984 7983930 Bva04g01173 04 7980984 7983930 ECH