Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01171 ATGGCATTGGCTCCTACTCCAAAAGTAGTCCTGGGTTCAATtgcctttttaattttctgggTGTTAGCAGTTTTCCCAGCTGTGCCTTTTCTACCTGTCGGAAGAACTGCAGGGTCCCTGCTAGGTGCCATGCTTATGGTTGTATTCCGAGTTATTTCTCCGGATCAAGCTTATGCTGCAATTGATCTCCCAATTCTTGGTCTTCTTTTTGGAACAATGGTTGTCAGTGTTTATCTTGAAAGAGCAGACATGTTCAAATACTTAGGAAAGTTGCTCTCTTGGAAAAGTAGAGGAGCAAAGGACTTGCTTTTTCGAATCTGTCTGATTTCTGCTATATCAAGTGCACTTTTCACCAATGACACCTCTTGTGTTGTTTTGACTGAATTTGTATTGAAAATTGCAAGGCAGCATAACCTTGCACCTCACCCCTTCCTActtgcccttgcttcatgtgCTAATATTGGATCAGCAGCAACTCCAATTGGAAACCCCCAGAATCTGGTTATAGCTGTTCAGAGTAAATTATCATTTGGAGAATTTCTTATTGGTATTCTTCCAGCTATGGTCATTGGAGTTCTAGTGAATGCTTTAATTCTTCTATCCATGTATTGGAGGTTATTATCTGTTCGTAAGGATGAAGAAGATGCAAATACAGAAGTTGTAGCAGAAGAGGATGTCAATTCTCATCGGTTTTCTCCCGCCACAATGTCTCATTTTTCATccttaaattctcaagaatggAATTCCGGTCTAGAATCTGTCAATGTTCAGTACTATCCTGAAAACATGGAGAGGGTTCAGGGTCTAAGAAACCGAGCAAGTGTAAGTGAAACTGCTAGTGAAATTTACATAACCCCTAGTAGCACACTGGATTCTGCTAGAAACTCTAATGCATCAAAGGAGGGGATAAATGGTATACATTCCCAAACATGGGAGGAAAATAGTCCTCCGAAGACTATTGAACCAAGAGATGCTCAGTTTATGCACTCTTCAGAAGAAAAGTACAATGTAAGcatgaaattgaaaaggatACTTTGGAAGTGTTGTGTTTATGTTATCACATCAGGAATGTTGGTTGCTTTACTTCTAGGTTTGAATATGTCATGGACTGCAATTACCGCTGCGCTAGCTCTTGTGGTGCTTGATTTCAAGGATGCTAGGCCATCCTTAGAGAAGGTTTCATATTCACTTTTGATATTCTTCTGTGGAATGTTCATCACAGTAGATGGCTTCAACAAAACTGGGATTCCAAGTGCTGTGTGGGATTTTATGGAACCCTATTCTCGCGTAGATTGTGCTAGCGGAATAGCAATACTTGCCCTCGTGATACTTTTGCTATCAAATTTGGCTTCAAATGTACCAACTGTTTTGTTGCTTGGAGCAAGGGTTGCAGCATCAGCTGCTGCAATTTCGAAAGCAGATGAAAAGAAGGCATGGCTGATATTAGCTTGGGTGAGCACGGTAGCTGGGAATCTGTCACTGTTAGGATCAGCTGCCAACTTAATAGTGTGTGAACAGGCTCAACGATCTTCACACCTTGCATACACATTAACCTTCTGGAATCATCTAAAATTTGGACTTCCTTCCACTCTCATTGTCACTGCAATTGGTTTGACACTCgtaaaatg 1628 0.3907 MALAPTPKVVLGSIAFLIFWVLAVFPAVPFLPVGRTAGSLLGAMLMVVFRVISPDQAYAAIDLPILGLLFGTMVVSVYLERADMFKYLGKLLSWKSRGAKDLLFRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLAPHPFLLALASCANIGSAATPIGNPQNLVIAVQSKLSFGEFLIGILPAMVIGVLVNALILLSMYWRLLSVRKDEEDANTEVVAEEDVNSHRFSPATMSHFSSLNSQEWNSGLESVNVQYYPENMERVQGLRNRASVSETASEIYITPSSTLDSARNSNASKEGINGIHSQTWEENSPPKTIEPRDAQFMHSSEEKYNVSMKLKRILWKCCVYVITSGMLVALLLGLNMSWTAITAALALVVLDFKDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSAVWDFMEPYSRVDCASGIAILALVILLLSNLASNVPTVLLLGARVAASAAAISKADEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQAQRSSHLAYTLTFWNHLKFGLPSTLIVTAIGLTLVK 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01171 542 CDD YbiR_permease 28 541 - -
Bva04g01171 542 Pfam Citrate transporter 27 489 IPR004680 GO:0016021|GO:0055085
Bva04g01171 542 PRINTS Arsenical pump membrane protein signature 183 206 IPR000802 GO:0015105|GO:0015700|GO:0016021
Bva04g01171 542 PRINTS Arsenical pump membrane protein signature 109 133 IPR000802 GO:0015105|GO:0015700|GO:0016021
Bva04g01171 542 PANTHER TRANSPORTER ARSB-RELATED 1 541 - -
Bva04g01171 542 PANTHER TRANSPORTER ARSB-RELATED 1 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01171 Bva-Chr4 7953833 7958140 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01171 - - ccaj:109818851 776.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01365 03 13131712 13132212 Bva04g01171 04 7953833 7958140 ECH
Bva04g01171 04 7953833 7958140 Bva04g01171 04 7953833 7958140 ECH