Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01169 ATGTGGCCGTTCAGCAGAAAAGGACCCTCTGGgttttcatcatcttccaCTGCAGAGGAGGTTACTCAGGGTATCGATGGCAGTGGCCTCACTGCAATAGTCACAGGAGCCTCCAGTGGTATAGGTGCTGAGACTACGCGTGTTCTGGCTTTGCGTGGCGTCCATGTGATTATGGGGGTGAGAAATATGCTTGCTGCTAAAGAAGTCAAGGCAGCAATAATCAAGGAGATACCTGCTGCTAAAGTTGATGCCATGGAGTTAGATCTCAGTTCAACGGCATCTGTCCGGAAATTTGCATCAGAATATAATTCCTCCCGTCGTCCTTTGAACATACTGATTAACAATGCAGGATTGGCAACCTCTTTCAAGCTTTCCAAAGACAATATTGAACTAGTTTTTGCCACAAATCATTTAGgtcattttcttttgacaaatcTTTTGTTGGATAACATGAAGAAAACAGCTCGTAGAAgtaagaaagaaggaagaattGTTAATGTCTCCTCACGGGCTCATTGGCTTTCATATCGTGAAGGAATCCGCTTTGATAAAATCAATGACAAGACAAGTTACAGAACTATGCTTGCGTACGGTCAGTCAAAGCTTGCTAATATTTTACATGCCAACGAACTAGCAAGACGACTCAAGGAAGGTGGAGAGAATATTACAGCAAATTCTGTTCACCCAGGAACGGTTGCAACTAATTTTCTCCGGAACAGCAGTATAATTAATAACGATGCAGTTAAAGCACTTGGgagaatttttcttaaaaatgttCAGCAGGGTGCGGCAACAACATGCTATGTGGCATTGCATCCACAAGTGAAGGGAATTAGTGGGGAGTTTTTTTCTGATAGTAATTTGGCCAAAGCAAGCTCAAAGGCAAGGGACATGGATTTAGCCAGGAAACTCTGGGATTTCAGCATGAATTTGATTAGAGAAATTGATACATCAACCAAGGgaaaatg 968 0.3967 MWPFSRKGPSGFSSSSTAEEVTQGIDGSGLTAIVTGASSGIGAETTRVLALRGVHVIMGVRNMLAAKEVKAAIIKEIPAAKVDAMELDLSSTASVRKFASEYNSSRRPLNILINNAGLATSFKLSKDNIELVFATNHLGHFLLTNLLLDNMKKTARRSKKEGRIVNVSSRAHWLSYREGIRFDKINDKTSYRTMLAYGQSKLANILHANELARRLKEGGENITANSVHPGTVATNFLRNSSIINNDAVKALGRIFLKNVQQGAATTCYVALHPQVKGISGEFFSDSNLAKASSKARDMDLARKLWDFSMNLIREIDTSTKGK 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01169 322 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Bva04g01169 322 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Bva04g01169 322 PRINTS Glucose/ribitol dehydrogenase family signature 220 237 IPR002347 -
Bva04g01169 322 PRINTS Glucose/ribitol dehydrogenase family signature 156 172 IPR002347 -
Bva04g01169 322 PRINTS Glucose/ribitol dehydrogenase family signature 197 216 IPR002347 -
Bva04g01169 322 Pfam short chain dehydrogenase 31 171 IPR002347 -
Bva04g01169 322 PANTHER RETINOL DEHYDROGENASE 2 313 - -
Bva04g01169 322 Gene3D - 22 315 - -
Bva04g01169 322 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 289 IPR036291 -
Bva04g01169 322 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 313 - -
Bva04g01169 322 CDD retinol-DH_like_SDR_c_like 29 305 - -
Bva04g01169 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Bva04g01169 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 170 IPR002347 -
Bva04g01169 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 197 216 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01169 Bva-Chr4 7937802 7941259 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01169 31 169 Acyl Lipid Metabolism Gene Families AT1G62610 33.333 1.12e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01169 - - qsu:111998952 435.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01169 04 7937802 7941259 Bva04g01169 04 7937802 7941259 ECH