Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01144 ATGAATTCCTTAGCCCCTACTAGGTTCAAGATAGTCCATAAACTTTcctattttttgaatatttctcgGACGTTGTGTGACCATCCATTTCGTAGTGATGGGATTGAAAATGGTTTTGAGTGTGTTGAGGAGCCTTTGAGAAAAATGTGGAAATTTTTAGATCATGATTCCACCTCTGATGAAATCGTCAATGCATATAAGGATAACTGTCATAACCAACAGTATTATTCACTTAGACAAAGACTTTTAGGAAATATGAAGTTAGATGCTGAAAGGGTTCTTCAAATGCTTCAACAAGATGGTCCTGGCTTTGACGCAAGATTGGCTTTAGATGAGTTGCATATCAGGCCGTCGGCACTTCTTGTGAGAGAAGTTCTTATTGGAATattgaaaaacataaattatggaAACAAGACTAGGTGGGCAAAATTggcatataaatttttttcatggtCAAGTCAGAAGGAGACTTACAGGCACACTGCAAATTCGtatcatttaattatgaaGATATTTGCAGAGTGTGAGGAGTTTAAGGCAATGTGGAGGCTACTTGATGAGATGATGGAGAAAGGGTTGCCAACCACTGCACGCACTTTCAACATTTTAATATGTACATGTGGTGAGGCAGGCTTGGCTAGGAAAGTCGTGGAGAGGTTCATAAAATCAAAGACATTTAACTTTAGGCCATTCAAGCACTCCTACAATGCTATTCTCCATTGTCTTTTAGTTTTACACCAATTCAAGTTGATCGAGTGGGTTTATCAACAGATGTTGCTAGATGGTTATTCTTCtgatattttaacttataatctTATCATGTATGCCAAGTACAGACTTGGGAAGTTGGATCAGTTCCATAGACTTCTTGATGAAATGGGTAGAAATGGATTTTTGCCAGATTTTCATACTTATAATATCCTTCTTCATGTTCTTGGTAAAGGAGACAAACCGCTTGCAGCTCTAAATCTGTTGAATCACATGAAAGAAACAGGTTTGGAGCCAACTGTTCTTCACTTCACTACATTGATAGACGGGCTCAGTAGAGCTGGAAATCTGGATGCCTGCAGATACttttttgatgaaatgatAAAGAATGGTTGCGTGCCAGATGTGGTGTCTTACACTGTAATGATCACAGGGTATGTTGTAGCCGGCGAGCTTGAGAAAGCTCAGGAAATGTACCATGAGATGATTTCTAGACAACAAATCCCAAATGTATTTACATACAACTCCTTAATACGTGGGTTGTGTATGGCAGGGAAGTTTGAGGAAGCATGCTCAATGCTCAAGGAAATGGAGAGGAAGGGTTGCAATCCAAATTTTGTTGTGTACAGTACCTTAGTGAGTAGTTTGAGGAAAGCTGGAAAACTTGCTGAAGCTCATGAAGTAATAAGACAGATAATGGAAAGGGGGAAGTATGCCCATCTAATTTCAAGGATCAAAGGATATCGGAGATTGTA 1463 0.3698 MNSLAPTRFKIVHKLSYFLNISRTLCDHPFRSDGIENGFECVEEPLRKMWKFLDHDSTSDEIVNAYKDNCHNQQYYSLRQRLLGNMKLDAERVLQMLQQDGPGFDARLALDELHIRPSALLVREVLIGILKNINYGNKTRWAKLAYKFFSWSSQKETYRHTANSYHLIMKIFAECEEFKAMWRLLDEMMEKGLPTTARTFNILICTCGEAGLARKVVERFIKSKTFNFRPFKHSYNAILHCLLVLHQFKLIEWVYQQMLLDGYSSDILTYNLIMYAKYRLGKLDQFHRLLDEMGRNGFLPDFHTYNILLHVLGKGDKPLAALNLLNHMKETGLEPTVLHFTTLIDGLSRAGNLDACRYFFDEMIKNGCVPDVVSYTVMITGYVVAGELEKAQEMYHEMISRQQIPNVFTYNSLIRGLCMAGKFEEACSMLKEMERKGCNPNFVVYSTLVSSLRKAGKLAEAHEVIRQIMERGKYAHLISRIKGYRRL 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01144 487 TIGRFAM PPR: pentatricopeptide repeat domain 443 472 IPR002885 -
Bva04g01144 487 TIGRFAM PPR: pentatricopeptide repeat domain 408 441 IPR002885 -
Bva04g01144 487 TIGRFAM PPR: pentatricopeptide repeat domain 373 406 IPR002885 -
Bva04g01144 487 TIGRFAM PPR: pentatricopeptide repeat domain 164 193 IPR002885 -
Bva04g01144 487 TIGRFAM PPR: pentatricopeptide repeat domain 340 372 IPR002885 -
Bva04g01144 487 TIGRFAM PPR: pentatricopeptide repeat domain 303 337 IPR002885 -
Bva04g01144 487 Pfam PPR repeat family 335 382 IPR002885 -
Bva04g01144 487 Pfam PPR repeat family 266 312 IPR002885 -
Bva04g01144 487 Pfam PPR repeat family 405 452 IPR002885 -
Bva04g01144 487 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 1 486 - -
Bva04g01144 487 Gene3D Tetratricopeptide repeat domain 110 247 IPR011990 GO:0005515
Bva04g01144 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Bva04g01144 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Bva04g01144 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Bva04g01144 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Bva04g01144 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Bva04g01144 487 SUPERFAMILY TPR-like 375 472 IPR011990 GO:0005515
Bva04g01144 487 Gene3D Tetratricopeptide repeat domain 330 400 IPR011990 GO:0005515
Bva04g01144 487 Gene3D Tetratricopeptide repeat domain 401 472 IPR011990 GO:0005515
Bva04g01144 487 Gene3D Tetratricopeptide repeat domain 248 329 IPR011990 GO:0005515
Bva04g01144 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 195 IPR002885 -
Bva04g01144 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 441 475 IPR002885 -
Bva04g01144 487 PANTHER OS10G0506000 PROTEIN 1 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01144 Bva-Chr4 7692582 7697694 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01144 164 479 Glycosyltransferase AT1G05670 28.213 2.08e-39 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01144 - - qsu:112001594 749.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01144 04 7692582 7697694 Bva04g01144 04 7692582 7697694 ECH