Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01138 ATGGTTAAGCTAACAATAATTGGGAGAGTGAGTGATGGATTGCCTTTGGCACAAGGTCCCAGATTcatgaatgaagaaaatggatATCTTTCTTGTTACAAGGAACAAGCAGAGTTCATACTCCGAGACATTTCAAGAGGATCCTTGGCCCCTACCAAAATGACCATTCGTATTCATCATAACTGCTTCAACTACTTGGTGGAGAATGGAGTCTTTTTCATTGTATTGTGTGACTCCTCTTATCCAAGAAAATTGGCTTTCCACTATCTGCAAGACttaaaaaaggaatttgagaagtttgatgAAACCCTCATAGGAAAAATTACAAGGCCATACAGCTTTGTCAGATTTGATGGTATAATTGCAAATATCAGAAGACAATACATTGATACAAGAACTCAGGCCAACCTATCAAAACTTAATGCTAATTGGAAAGAAGATTTAGATATTGTCACTGAAGACATGGCCCAAATattagaaagaagaagaaattcagAAATAGTGGAAAGCTTACCAGCAAGTCACCAATCTGCCCCATCAATATGGGCATCTCCACTCCTTGAGGTGATTGCCTTGAAATGGACTCCTATTTTGATCGTTGCTGTTGTTTCCGCGGTCCTTTTATGGGCTACATTAGTCCTCACAGAGGACTCTATTACTTCAAGCTGGTG 671 0.3621 MVKLTIIGRVSDGLPLAQGPRFMNEENGYLSCYKEQAEFILRDISRGSLAPTKMTIRIHHNCFNYLVENGVFFIVLCDSSYPRKLAFHYLQDLKKEFEKFDETLIGKITRPYSFVRFDGIIANIRRQYIDTRTQANLSKLNANWKEDLDIVTEDMAQILERRRNSEIVESLPASHQSAPSIWASPLLEVIALKWTPILIVAVVSAVLLWATLVLTEDSITSSW 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01138 223 Gene3D Longin domain 1 159 - -
Bva04g01138 223 ProSiteProfiles Longin domain profile. 6 121 IPR010908 -
Bva04g01138 223 CDD Longin 5 128 IPR010908 -
Bva04g01138 223 PANTHER VESICLE-TRAFFICKING PROTEIN SEC22B 1 219 IPR044565 GO:0005484|GO:0006888|GO:0006890
Bva04g01138 223 SUPERFAMILY SNARE-like 1 128 IPR011012 -
Bva04g01138 223 Pfam Regulated-SNARE-like domain 37 118 IPR010908 -
Bva04g01138 223 PANTHER SNARE-LIKE SUPERFAMILY PROTEIN 1 219 - -
Bva04g01138 223 SMART Longin_2 36 120 IPR010908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01138 Bva-Chr4 7651948 7653510 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01138 52 168 Miscellaneous Gene Families AT3G54300 26.812 1.71e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01138 K08517 - gmx:100781527 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01138 04 7651948 7653510 Bva04g01138 04 7651948 7653510 ECH