Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01102 ATGGACTCAGAGAAGAAAGTGGAAGACcctgagaagaaaaagaagaaggaagagaaggcaagagagaaagaattgaaaaaacaGAAAGCTGCTGAGAAAGCTGCAATGCGTCAGAAACAAGAACAACAAGCATCCAGTGCtccaaaaaagaatgaaagaaaaaatgtaaagcGTGCAGAGGATGATAATCCTGAGGATTATATTGATCCTGAGACTCCTTTGGGTGAGAAGAAACGGTTGTCGCAACAAATGGCAAAACAGTACAGTCCAAGTGCTGTAGAGAAGTCGTGGTATGAGTGGTGGGAGAAATCAGGCTTCTTTGTGGCAGATGCTAACAGCTCCAAACCACCATTTGTTATTGTCTTGCCTCCACCTAATGTGACTGGTGCTCTCCACATAGGCCATGCTCTAACTGCAGCAATAGAGGACACAATAATTCGTTGGCGGAGAATGTCTGGATACAATGCCTTGTGGGTGCCTGGGATGGACCATGCGGGGATTGCAACACAGGTAGTTGTGGAGAAAAAGATAATgcgtgaaaaaaaattaaccaggCATGATTTGGGTCGTGAGAAATTTATATCTGAGGTTTGGAACTGGAAAAACAAGTATGGGGGCACAATTTTACGGCAACTACGTCGTCTTGGAGCCTCTCTGGATTGGTCTCGTGagAGCTTCACAATGGATGACAGAAGATCAAGGGCGGTAACAGAGGCTTTTGTGAGGCTTTATAAGGAAGGCCATATCTATAGGGACCTCCGTTTAGTGAATTGGGATTGTGTCTTACGCACTGCAATATCTGATATTGAGGTagattatattgatattaaagAAAGGACTCCACTAAAGGTTCCTGGTTATGATAAACCAGTGGAATTTGGAGTTTTAACATCATTTGCATACCCTTTGGAAGGGGACCTAGGTGAAATTGTTGTGGCCACAACTAGAATAGAAACTATGTTGGGTGACACTGCAATCGCTGTACATCCTGATGACAGAAGATATAGCCATCTACATGGAAAATCTGCCATTCACCCATTTAATGGCCGAAAGCTACCAATAGTTTGTGATGCTATTCTTGTTGATCCAAAGTTTGGGACTGGTGCTGTTAagATTACCCCTGCCCATGATCCAAATGATTTTGAGGTTGGAAAACGACACAAccttgaatttattaatattttcactgATGATGGGAATATAAATGGCAATGGTGGCTCTGATTTTGTGGGTATGCCACGATTTAAAGCTCGGGAGGCAGTTAAAGAAGCATTAGAAAAGAAGGGCCTTTACAGAGGTTCTAAAAACAATGAGATGCGCCTTGGTGTATGTTCAAGAAGCAACGATGTTGTGGAGCCCATGATAAAGCCACAATGGTACGTTAGTTGCAATGATTTAGCAAAAAAAGCTCTTGATGCTGTCATGGATGAGGAAAATAGAATGATGGAGATTATTCCAAAACAATATTCTGCTGACTGGAAGAGATGGCTAGAAAACATTCGTGATTGGTGTATTTCACGGCAACTTTGGTGGGGTCACCAAATACCTACATGGTATGTCACATTAGAGGATGACATCCTGAAGGAATTTGGTGCATACAATGATCGTTGGGTAGTGGCGAGAAACAAGGAGGAGGCCGAAGAGGAGGCAAGCAGAAAATATAATGGCAAGAAGTTCGAATTGATGCAGGATCCTGATGTTCTTGATACATGGTTTTCTTCTGGTCTGTTCCCATTATCTGTATTGGGATGGCCTGATGAAACAGAAGATCTGAGGGCATTTTATCCAACTTCTGTGCTGGAAACCGGCCATGATATCCTCTTCTTCTGGGTTGCTCGCATGGTGATGTTAGGAATGAAGTTGGGTGGTGATGTTCCTTTTAGAAAGGTTTATTTGCATCCCATGGTTCGGGATGCACATGGGCGCAAAATGTCCAAGTCTTTAGGAAATGTTATTGATCCTATTGAAGTTATAAATGGTATAACACTGGAAGATCTGCAGAAGAGGTTAGAGGATAGTAACCTGGACCCAAAAGAATTAACTATTGCCAAAGAAGGTCAGAAGAAGGACTTTCCTAATGGTATTGATGAATGTGGTGCTGATGCTCTCCGTTTTGCACTAGTGTCATACACAGCTCAGtctgataaaattaatttagatattcAAAGGGTCGTTGGGTATCGGCAATGGTGTAATAAGTTGTGGAATGCAATACGATTTGCTATGACCAAGCTTGGAGATGATTTTGCTCCATCTACTGATTGGACTCCAGATGTTCTGCCATTTAGCTGTCAATGGATACTCTCAGTGTTGAATAAAGCCATAAGTAAAACACTGAAGTCGCTAGAATCATATGATTTTGCACATGCTGCCACCTCTGTGTATTCTTGGTGGCAATATCAATTGTGTGATGTCTTTATTGAAGCAATTAAACCATACTTTGCTGGTGACAGCACTGAGTTTACTTCTGAAAGACGCTATGCTCAAAATACTTTGTGGCTATGTCTTGACAATGGCCTGCGGTTACTTCACCCCTTTATGCCCTTTGTAACGGAAGAATTGTGGCAGCGCCTTCCTTCATCAAGTGAATGTGAGAAAGCAAAATCTATTATGATATGCGACTATCCATCAATAGTAGAGTGCTGGGACAATGAAAAGGTGGAGAATGAGATGGATCTTTTAGAATCTGTAGTAAAGTCTCTCAGGTCATTGGCAAATGAAAGGCGTGACAGGCGGCCAGCTTTTGTTCTCTGCCGAACACAGGCAGTTGCAGATATTATTAACGGCCATAAACTGGAGATTGTTACTCTAGCGAATCTATCGTCTTTGAAAGTAATAAACGAGAGTGAGGTTCCATCTGGATGTGCTGTGAACGTTGTGAACGAAAACGTTTCTGTTTACTTGGATCTTAAAATCTCTGCAGAAGCACAGTTAGGAGAGATCAAGAAAAAGATGGATTTGTTGAGGAAGCAAAAGGAAACCTTGGAGAAGAAGATAAATGCTTCTGGATATAGAGAAAAGGCTTCTTCGAATGTTCAAGCGGCCGATGATGAGAAGCTAGCAAGCCTCGTGAAGCAGCTTTTAACACTTGAGGAAACTGCAGGGAGTTTGGAATATCAAGTAtccaaaaaatg 3134 0.4001 MDSEKKVEDPEKKKKKEEKAREKELKKQKAAEKAAMRQKQEQQASSAPKKNERKNVKRAEDDNPEDYIDPETPLGEKKRLSQQMAKQYSPSAVEKSWYEWWEKSGFFVADANSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKIMREKKLTRHDLGREKFISEVWNWKNKYGGTILRQLRRLGASLDWSRESFTMDDRRSRAVTEAFVRLYKEGHIYRDLRLVNWDCVLRTAISDIEVDYIDIKERTPLKVPGYDKPVEFGVLTSFAYPLEGDLGEIVVATTRIETMLGDTAIAVHPDDRRYSHLHGKSAIHPFNGRKLPIVCDAILVDPKFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGNINGNGGSDFVGMPRFKAREAVKEALEKKGLYRGSKNNEMRLGVCSRSNDVVEPMIKPQWYVSCNDLAKKALDAVMDEENRMMEIIPKQYSADWKRWLENIRDWCISRQLWWGHQIPTWYVTLEDDILKEFGAYNDRWVVARNKEEAEEEASRKYNGKKFELMQDPDVLDTWFSSGLFPLSVLGWPDETEDLRAFYPTSVLETGHDILFFWVARMVMLGMKLGGDVPFRKVYLHPMVRDAHGRKMSKSLGNVIDPIEVINGITLEDLQKRLEDSNLDPKELTIAKEGQKKDFPNGIDECGADALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAIRFAMTKLGDDFAPSTDWTPDVLPFSCQWILSVLNKAISKTLKSLESYDFAHAATSVYSWWQYQLCDVFIEAIKPYFAGDSTEFTSERRYAQNTLWLCLDNGLRLLHPFMPFVTEELWQRLPSSSECEKAKSIMICDYPSIVECWDNEKVENEMDLLESVVKSLRSLANERRDRRPAFVLCRTQAVADIINGHKLEIVTLANLSSLKVINESEVPSGCAVNVVNENVSVYLDLKISAEAQLGEIKKKMDLLRKQKETLEKKINASGYREKASSNVQAADDEKLASLVKQLLTLEETAGSLEYQVSKK 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01102 1044 Hamap Valine--tRNA ligase [valS]. 84 1038 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Bva04g01102 1044 TIGRFAM valS: valine--tRNA ligase 84 1020 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Bva04g01102 1044 PRINTS Valyl-tRNA synthetase signature 446 459 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Bva04g01102 1044 PRINTS Valyl-tRNA synthetase signature 564 585 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Bva04g01102 1044 PRINTS Valyl-tRNA synthetase signature 329 346 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Bva04g01102 1044 PRINTS Valyl-tRNA synthetase signature 118 129 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Bva04g01102 1044 PRINTS Valyl-tRNA synthetase signature 595 613 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Bva04g01102 1044 Coils Coil 12 42 - -
Bva04g01102 1044 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 731 971 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bva04g01102 1044 SUPERFAMILY Nucleotidylyl transferase 83 729 - -
Bva04g01102 1044 Pfam tRNA synthetases class I (I, L, M and V) 97 720 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bva04g01102 1044 MobiDBLite consensus disorder prediction 46 76 - -
Bva04g01102 1044 CDD Anticodon_Ia_Val 719 858 IPR033705 -
Bva04g01102 1044 Gene3D - 725 908 - -
Bva04g01102 1044 MobiDBLite consensus disorder prediction 1 83 - -
Bva04g01102 1044 Gene3D HUPs 85 280 IPR014729 -
Bva04g01102 1044 Gene3D HUPs 463 718 IPR014729 -
Bva04g01102 1044 Gene3D - 292 436 IPR009008 GO:0002161|GO:0006418
Bva04g01102 1044 Coils Coil 884 904 - -
Bva04g01102 1044 MobiDBLite consensus disorder prediction 1 36 - -
Bva04g01102 1044 Pfam Anticodon-binding domain of tRNA ligase 765 907 IPR013155 GO:0004812|GO:0006418
Bva04g01102 1044 Coils Coil 971 998 - -
Bva04g01102 1044 PANTHER BNAA08G31530D PROTEIN 8 1033 - -
Bva04g01102 1044 CDD ValRS_core 116 719 - -
Bva04g01102 1044 SUPERFAMILY ValRS/IleRS/LeuRS editing domain 291 441 IPR009008 GO:0002161|GO:0006418
Bva04g01102 1044 PANTHER VALYL-TRNA SYNTHETASES 8 1033 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Bva04g01102 1044 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 125 136 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01102 Bva-Chr4 7334900 7344240 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01102 K01873 - jre:108981981 1686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01102 04 7334900 7344240 Bva04g01102 04 7334900 7344240 ECH