Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00961 ATGGAGAGACCATCAGCTTCCTTGGAGTTTATAGCATTGGCACATTTACTCTCTTGGGCTCTGCTTCTGAACTCTGCAATCTGTGCAAACTTCAGTGAATTATTCCAACCATATTGGGCACCAGATCATATTGTAACTCAAGGAGACCTCACCGCATTGACCCTGGACAATGTTTCTGGTTGTGGGTTTGAATCAAAGAGTAAGTACTTGTTTGGCAAAGCAAGTGTAGAGATAAAGCTAGTTGAAGGAGACTCTGCAGGCACAGTCACTGCCTTCTATATGTCCTCAGATGGAGATTATCATGATGAGCTAGACTTTGAGTTTCTGGGGAACTTATCTGGAGAGCCATATCTTGTTCAAACAAATGTTTATGCCAATGGGACTGGAAATAGAGAGCAGAGGCATTCACTTTGGTTTGATCCCACAGCAGATTTCCACACTTATTCCTTCTTCTGGAATTCTCACACCATTTTGTTTCTTGTTGATAACATCCCAATCAGAATGTTccaaaacaaggaaaagaatgGCGTGGCTTACCCAAGAAATGAAGCAATGAGGATCCGTGGATCTGTGTGGAATGCAGATGATTGGGCTACGCAAGGAGGGAGGATCAAAACCAATTGGAGCCACTCACCGTTTGTTTCGAAATTTGGTTCTTTCGAGATAAATGCATGCGAGTTGTCACCGGAAAGCAATGAGGTTGAGGCCAAAGCCAACTGTGGAAGATTGAGCAGGTTCTGGTGGAATAGACCTTCATTGAGGAAATTAAACAAACACATGAGGCACCAACTCAGGTGGGTTCAAGCAAGACATTTGATCTATGACTACTGCAAGGATACTGGTCGCTTCAGTGAGGTGCCCAGGGAATGTGCATCTTA 878 0.4294 MERPSASLEFIALAHLLSWALLLNSAICANFSELFQPYWAPDHIVTQGDLTALTLDNVSGCGFESKSKYLFGKASVEIKLVEGDSAGTVTAFYMSSDGDYHDELDFEFLGNLSGEPYLVQTNVYANGTGNREQRHSLWFDPTADFHTYSFFWNSHTILFLVDNIPIRMFQNKEKNGVAYPRNEAMRIRGSVWNADDWATQGGRIKTNWSHSPFVSKFGSFEINACELSPESNEVEAKANCGRLSRFWWNRPSLRKLNKHMRHQLRWVQARHLIYDYCKDTGRFSEVPRECAS 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00961 292 CDD GH16_XET 29 290 IPR016455 GO:0010411|GO:0016762|GO:0042546
Bva04g00961 292 Pfam Glycosyl hydrolases family 16 34 209 IPR000757 GO:0004553|GO:0005975
Bva04g00961 292 ProSitePatterns Glycosyl hydrolases family 16 active sites. 103 113 IPR008263 GO:0004553|GO:0005975
Bva04g00961 292 PIRSF EndGlu_transf 4 292 IPR016455 GO:0010411|GO:0016762|GO:0042546
Bva04g00961 292 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 18 291 IPR044791 GO:0004553
Bva04g00961 292 Gene3D - 21 292 - -
Bva04g00961 292 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18 291 - -
Bva04g00961 292 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 17 217 IPR000757 GO:0004553|GO:0005975
Bva04g00961 292 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 245 290 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Bva04g00961 292 SUPERFAMILY Concanavalin A-like lectins/glucanases 31 291 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00961 Bva-Chr4 6320559 6322017 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00961 51 290 Glycoside Hydrolase AT4G03210 56.667 1.36e-105 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00961 K08235 - pvy:116113921 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00961 04 6320559 6322017 Bva04g00961 04 6320559 6322017 ECH