Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00884 ATGGCCTCTCAATCCGCCAATCTATGGGTGCTGTTGTCTCTGGGTTTGGCTGGAATTTTGTTGATGACAAGAAAGCTTAAGAAGGCCATCAAAGAAGACTTTGGCGCTTTTGTCGAGAAGCTTCAGCTAGATCCTCCTCCTCAGCCTGCTCCGCCTAAAGCTCCACACCCACTCAGTGACCttactttcgccgtttccgacGTGTTTGATATAGAGGGACATGTTACCTCATTTGGCCATCCAGACTGGGCACGAACCCGTGAACCTGCTTCTCAGACATCTCCTGCAGTTTCTGCTCTTGTTGAAGGAGGTGCAACTTGCATTGGAAGAACTGTTGTGGATGAGCTAGCATATGGCATCAGTGGTGAAAATAAGCATTTTGAAACACCAACCAATCCTGCTGTGCCTGGTCGAGTGCCAGGTGGATCCTCTAGTGGtgctgctgttgctgttgctgctAATCTGGTTGATTTCTCACTTGGTATTGATTCCGTTGGTGGGGTAAGAGTGCCTGCTGGATTTTGTGGCATTCTAGGATTTCGGCCTTCACATGGGGCTGTTCCTCACACGGGGTGTATACATGTTTCAACAAGTTTGGACACCATTGGTTTGTTTACAAAAGATCCTAATATTTTGCATCGTGTTGGACACGTACTACTGCCTGCATCATTTGTAGCCCAACGCAATCCTCAGCAGATAGTAATAGCAGATGATTGTTTTCAGCATCTAAATGTTCCTCCTGACAGGAGTTCTCTGGTGGTGATTAAATCTGCAGAGAAGCTTTTCGGAAAGCAAGTATTGAAGCATATAAATCTTGAGGACTACTTAAGATCTAAACTTCCTAGCTTGAAAGAGCTCCGAAGTTCGAAAATGAATGGAGAACTGAAAACTTCTTCATTAAAGTTACTTGCCAACACTATGCAGTCTCTTCAAAGACATGAATTCAGGCATGAGCACAATGAATGGTTAAGCACTGTAAAGCCTGCAATTCATCCTGCCATCTCAGTACAACTGCAAGAAGTGTTGGAGGCGTCTGTTGTAGAAATCGAATTCTACAAGTCCATTAGAGATGAGATGCGAGCTGCaataaattctcttttgaaGGATGAAGGGGTTTTGGTTATCCCTACTGTAGCTGATCCTCCTCCAAAATTGGGTGGGAAGGACATCCTATCTGAGGATTATCAAAGCCGTGCATTTAGTCTGCTAAGTATTGCTAGCATCTCAGGTTGCTGTCAGGTCACAATACCATTAGGATTTCATGACAAGTGTCCTATTTCAGTGTCCTTGATAGCTCGGCATGGTGGTGATCGCTTTTTACTGGATACTCTAAAGACCATGTATGCAACTTTTCAAGAGCAGGCTGATAGTGCTGCAAAAACTAGATCATCAAAAAATGGTCCAAGTCGAGAAGAATCTGCTGAAATTGCCAAAGAGAAGGGAAATCAAGCATTCAAAGATAAACAGTGGCAGAAAGCCATTGGATTTTATACAGAAGCTATCAAACTCAATGGCGATAATGCAACATACTACAATAACAGGGCTGCAGCTTATCTTGAACTCGGGAGTTTCCGCCAAGCTGAGGCAGATTGTACAAAAGCTATAGCCCTTGACAAAAAGAATGTTAAGGCCTATTTCCGAAGAGGTACAGCAAGAGAGATGCTATGCTACTATGAGGAGGCAATGAATGATTTTAAACATGCTCTTGTACTTGAGCCAACAAACAAAAGGGCATCTTCTTCTGTCGAAAGATTGAGGATGTTGTTCCGGTA 1772 0.4227 MASQSANLWVLLSLGLAGILLMTRKLKKAIKEDFGAFVEKLQLDPPPQPAPPKAPHPLSDLTFAVSDVFDIEGHVTSFGHPDWARTREPASQTSPAVSALVEGGATCIGRTVVDELAYGISGENKHFETPTNPAVPGRVPGGSSSGAAVAVAANLVDFSLGIDSVGGVRVPAGFCGILGFRPSHGAVPHTGCIHVSTSLDTIGLFTKDPNILHRVGHVLLPASFVAQRNPQQIVIADDCFQHLNVPPDRSSLVVIKSAEKLFGKQVLKHINLEDYLRSKLPSLKELRSSKMNGELKTSSLKLLANTMQSLQRHEFRHEHNEWLSTVKPAIHPAISVQLQEVLEASVVEIEFYKSIRDEMRAAINSLLKDEGVLVIPTVADPPPKLGGKDILSEDYQSRAFSLLSIASISGCCQVTIPLGFHDKCPISVSLIARHGGDRFLLDTLKTMYATFQEQADSAAKTRSSKNGPSREESAEIAKEKGNQAFKDKQWQKAIGFYTEAIKLNGDNATYYNNRAAAYLELGSFRQAEADCTKAIALDKKNVKAYFRRGTAREMLCYYEEAMNDFKHALVLEPTNKRASSSVERLRMLFR 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00884 590 ProSiteProfiles TPR repeat profile. 542 575 IPR019734 GO:0005515
Bva04g00884 590 SUPERFAMILY Amidase signature (AS) enzymes 55 444 IPR036928 -
Bva04g00884 590 MobiDBLite consensus disorder prediction 457 480 - -
Bva04g00884 590 ProSiteProfiles TPR repeat profile. 508 541 IPR019734 GO:0005515
Bva04g00884 590 PANTHER OUTER ENVELOPE PROTEIN 64, CHLOROPLASTIC 1 589 - -
Bva04g00884 590 Pfam Tetratricopeptide repeat 508 541 IPR019734 GO:0005515
Bva04g00884 590 SMART tpr_5 542 575 IPR019734 GO:0005515
Bva04g00884 590 SMART tpr_5 474 507 IPR019734 GO:0005515
Bva04g00884 590 SMART tpr_5 508 541 IPR019734 GO:0005515
Bva04g00884 590 Pfam Amidase 304 441 IPR023631 -
Bva04g00884 590 Pfam Amidase 55 208 IPR023631 -
Bva04g00884 590 Gene3D Tetratricopeptide repeat domain 447 588 IPR011990 GO:0005515
Bva04g00884 590 SUPERFAMILY TPR-like 472 579 IPR011990 GO:0005515
Bva04g00884 590 Gene3D Amidase signature (AS) domain 36 446 IPR036928 -
Bva04g00884 590 MobiDBLite consensus disorder prediction 465 480 - -
Bva04g00884 590 PANTHER AMIDASE 1 1 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00884 Bva-Chr4 5827679 5835362 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00884 29 449 Acyl Lipid Metabolism Gene Families AT1G08980 48.471 2.15e-135 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00884 - - gmx:100786059 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00884 04 5827679 5835362 Bva04g00884 04 5827679 5835362 ECH