Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00861 ATGGCTGAGGGACTCGTTCTTCGCGGCACCATGCGGGCTCACACCGACGTGATTACCGCCATTGCAACCCCAATCGACAATAGCGACATGATTGTCACATCTTCCCGCGATAAATCTATTATTTTGTGGCATCTCACCAAGGAGGAGAAGACTTACGGTGTTCCCCGCCGCAGGCTAACCGGTCACTCTCACTTTGTTGAGGACGTTGTACTATCCTCCGATGGGCAGTTCGCTCTTTCCGGATCCTGGGATGGTGAGCTCAGGCTCTGGGACTTGGCCACCGGCACCTCCGCTCGCAGATTTGTGGGTCACACTAAGGACGTTCTTTCAGTTGCTTTCTCAATCGACAACCGCCAGATCGTTTCGGCTTCCCGCGATCGCACCATTAAGCTCTGGAACACTCTCGGTGAGTGCAAGTACACAATTCAGGATAGTGATGCCCACTCTGAGTGGGTTAGCTGTGTTCGTTTCAGCCCGAGTACACTCCAACCCACTATTGTTTCCGCTTCCTGGGACCGAACCGTGAAAGTTTGGAACTTGACTAACTGTAAGCTGAGAAACACTCTCGCTGGCCACAACGGTTATGTCAACACCGTGGCTGTCTCTCCTGATGGATCGCTTTGCGCTAGTGGTGGCAAAGATGGGGTGATTTTGCTTTGGGATTTGGCTGAGGGAAAGAAGCTATACTCTCTCGACGCTGGTGCTATCATTCATGCTCTGTGCTTCAGTCCCAACAGGTACTGGCTATGTGCTGCTACTGAGCAGAGTATTAAGATATGGGATTTGGAGAGTAAGAGCATAGTTGAAGATTTGAAGGTTGATCTCAAAACTGAAGCTGAAAAGGCTGATGGTACCACAGCTGCCAATACCACAAAGAAGAAGGTTATTTACTGTACAAGTTTGAGCTGGAGTGCAGATGGAAGCACATTGTTTAGTGGCTACACTGACGGTGTGGTCAGAGTTTGGGGTATTGGACGTTATTA 983 0.5005 MAEGLVLRGTMRAHTDVITAIATPIDNSDMIVTSSRDKSIILWHLTKEEKTYGVPRRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLATGTSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQDSDAHSEWVSCVRFSPSTLQPTIVSASWDRTVKVWNLTNCKLRNTLAGHNGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLDAGAIIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKADGTTAANTTKKKVIYCTSLSWSADGSTLFSGYTDGVVRVWGIGRY 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00861 327 CDD WD40 7 322 - -
Bva04g00861 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 189 230 IPR001680 GO:0005515
Bva04g00861 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 101 133 - -
Bva04g00861 327 Pfam WD domain, G-beta repeat 99 133 IPR001680 GO:0005515
Bva04g00861 327 Pfam WD domain, G-beta repeat 228 261 IPR001680 GO:0005515
Bva04g00861 327 Pfam WD domain, G-beta repeat 187 221 IPR001680 GO:0005515
Bva04g00861 327 Pfam WD domain, G-beta repeat 9 43 IPR001680 GO:0005515
Bva04g00861 327 Pfam WD domain, G-beta repeat 55 91 IPR001680 GO:0005515
Bva04g00861 327 Pfam WD domain, G-beta repeat 140 179 IPR001680 GO:0005515
Bva04g00861 327 Pfam WD domain, G-beta repeat 299 322 IPR001680 GO:0005515
Bva04g00861 327 PANTHER BNAA06G12310D PROTEIN 1 327 - -
Bva04g00861 327 ProSitePatterns Trp-Asp (WD) repeats signature. 208 222 IPR019775 -
Bva04g00861 327 PANTHER RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 1 327 IPR045223 GO:0015935|GO:0043022
Bva04g00861 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 291 327 - -
Bva04g00861 327 SMART WD40_4 94 133 IPR001680 GO:0005515
Bva04g00861 327 SMART WD40_4 224 261 IPR001680 GO:0005515
Bva04g00861 327 SMART WD40_4 135 179 IPR001680 GO:0005515
Bva04g00861 327 SMART WD40_4 52 91 IPR001680 GO:0005515
Bva04g00861 327 SMART WD40_4 4 44 IPR001680 GO:0005515
Bva04g00861 327 SMART WD40_4 182 221 IPR001680 GO:0005515
Bva04g00861 327 SMART WD40_4 289 323 IPR001680 GO:0005515
Bva04g00861 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 95 - -
Bva04g00861 327 PRINTS G protein beta WD-40 repeat signature 120 134 IPR020472 -
Bva04g00861 327 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Bva04g00861 327 PRINTS G protein beta WD-40 repeat signature 208 222 IPR020472 -
Bva04g00861 327 SUPERFAMILY WD40 repeat-like 7 324 IPR036322 GO:0005515
Bva04g00861 327 Gene3D - 4 327 IPR015943 GO:0005515
Bva04g00861 327 ProSitePatterns Trp-Asp (WD) repeats signature. 166 180 IPR019775 -
Bva04g00861 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 189 226 - -
Bva04g00861 327 ProSitePatterns Trp-Asp (WD) repeats signature. 78 92 IPR019775 -
Bva04g00861 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 188 IPR001680 GO:0005515
Bva04g00861 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Bva04g00861 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 182 - -
Bva04g00861 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 327 IPR001680 GO:0005515
Bva04g00861 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 11 53 IPR001680 GO:0005515
Bva04g00861 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 133 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00861 Bva-Chr4 5650204 5652119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00861 140 324 Miscellaneous Gene Families AT5G08390 24.599 5.00e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00861 K14753 - pvy:116140488 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00861 04 5650204 5652119 Bva04g00861 04 5650204 5652119 ECH