Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00852 ATGTCCTGCTCATCAATTTTTCAAGGTTCTACCAGAACCGTCATGTCGCGGAGGGGActcatttttctctcatcCCTCAAGACCCATAGAGCTCTAAGACCTTCTCTTCTATTCATTTCTATGAGAAACCAAGCAATTGGGTTTAGGAGTTTCTACTACTCACCGCCAAAGACCGTTGAGGTAGACAGGGAAGAGAGGCAAGGTACGGGGTTCAGGCAGAAAACCATTGCTTTGCCGTTTTGGCATCAGCAGAGTTCCAATTATGGTCGTTTAGCGTATCGGGATGTGTCTAGTGATGAGTCTGATGTGGAATTTGGGTCTTCTCAATCCCAGCAACAATTGGGTGTTCCAACCCTTGAGAACATTGATGAGTGGAGATGGAAGCTGACAATGCTTCTCCGCAACAAAGATGAGCAAGAAGTTGTGTCAAGGGAGAAAAAGGACAGGCGTGACTTTGAGCAACTTTCAGCTTTGGCAACCAGGATGGGTTTATACAGCCGACAATATGCAAAAGTAGTTGCCATTAGCAAAGTACCTCTGCCAAATTACAGATCTGATTTGGATGATAAGCGTCCACAGCGAGAGGTTGTCTTACCTTTTGGTGTTCATAGAGAAGTAGATTCACATCTCAAAGCTCATCTTTCTCAAAAGTCTATAAGGAGGGGGAGTTTATTAGATGATTCCCTGCATAGATCAAGCAATGGTGGAAGTATTCGTAGTGATGAAGTAATTTTTGAACAACCAGAGCCGTTAACAAAGAACAGTGCTGTCATGGAGAAGATCCTTCGGCAAAAAAGTTTGCGACTGCAAAACCAGCAAAAAGATTGGcagGAATCTCCTGAAGGGCAAAAAATGCTTGAATTTCGTAGAAGTCTCCCAGCATTCAAAGAGAAGGATGCTTTATTAAAAGCCATAGCTGAGAATCAGGTTATTGTTGTCTCAGGTGAAACTGGTTGTGGTAAGACGACACAGCTTCCTCAATACATTTTAGAATCTGAGATTGAAGCCTCCCGTGGAGCTGCCTGTAGCATAATTTGTACTCAGCCTAGAAGAATATCTGCAATGTCTGTTTCTGAAAGAGTTGCAGCAGAACGTGGGGAGAAATTGGGAGAATCTGTTGGTTATAAAGTTCGGCTGGAGGGTATGAAGGGAAGGGACACTCGTCTTCTTTTTTGCACTACAGGTGTATTATTGCGGAGATTACTTGTAGACAGGGATTTGAAAGGTGTAAGTCATGTAATCATTGATGAAATTCATGAACGTGGAATGAATGAAGattttcttcttattgtcCTGAAGGAACTTCTCCGTCGCCGCCCAGAGCTGaggttgattttgatgagtgCAACTTTAAATGCTGAGCTTTTTTCTTCCTACTTTGGTGGTGCTCCAACCATACATATTCCTGGTTTTACTTACCCAGTTCGAGTACATTTTCTTGAGAACATTCTGGAAATGACTGGATATCGGCTGACTCCTTATAACCAAATTGATGACTATggtcaagaaaagaaatggaaaatgcaAAAGCAAGCTCAAGCTttcagaaaaaggaagagtgAGATTGCTTCTACTGTTGAGGATGCACTGGAAGCTGCAAACTTCAAAGGCTATAGCCTACGCACTCAGGAGTCACTATCCTGCTGGTGTCCTGACTCAATTGGTTTTAATCTTATTGAACATGTGCTTTGCCACATTGTTAGGAAAGAAAGGCCAGGTgctgttttggtttttatgaCTGGTTGGGATGATATAAACTCTTTAAAGGATCAGCTCCAATCACATCCTCTATTAGGAGATCCTAGTCGAGTATTGCTTCTTGCATGTCATGGCTCCATGGCCAGCTCTGAGCAGAggttaatatttgataaaccTGAAGAAGGAGTGAGGAAAATAGTCCTTGCCACTAATATGGCTGAGACTAGTATTACCATTAATGATGTTGTCTTTGTGGTTGACTGTGGAAAAGCCAAAGAAACATCATATGATGCACTAAATAACACTCCTTGCCTGCTTCCATCTTGGATCTCAAAGGCTGCTGCTCGGCAGagaagaggaagagCTGGTCGTGTTCAACCTGGGGAATGTTATCATCTCTATCCCAGATGTGTACATGATGCTTTTGCTGATTACCAATTGCCTGAGCTTTTAAGAACACCTTTACAATCCTTATGTCTGCAAATCAAGACTCTACAACTTGGAAGTATCTCAGAGTTCCTAGCTAGAGCTTTGCAGCCACCAGAACCTCTATCGGTTCAAAATGCTGTTGAATATTTGAAGACTATTGGGGCTTTAgatgagaatgaaaatttgacaGTTCTTGGGCGCAACTTGTCAATGCTTCCGGTAGAGCCCAAACTTGGCAAAATGTTGATTTTGGGAGCTATCTTCAATTGTCTTGATCCCATAATGACTATTGTTGCTGGACTTAGCGTAAAAGATCCATTTTTGATGCCATTTGACAAAAAGGATCTTGCAGAGTCTGCCAAAGCCCAGTTTGCTTCTCATGATTATAGTGACCATCTTGCTCTAGTCCGAGCTTATGAGGGTTGGAAAGATGCCGAATCACAGCAAGCTGGCTATGAATACTGttggagaaattttctttctgcacAAACACTTAGGGCTATTGACTCACTTAAAAAGCAATTTTTCTGGTTGCTTAAAGATATTGGTTTGGTTGATCAGAATGCTGAAAATTGCAATACGTGGAGTCATGATGAGCATCTGATCCGAGCAGTCTTCTGTTCGGGTTTGTTTCCTGGAATATGCTCTGTTGTGAATAAAGACAAGACAATAGCACTGAAAACAATGGAGGATGGTCAGGTTCTTCTGTACAGTAACTCTGTAAATGCTGCTGTACCCAGAATACCTTTCCCTTGGCTAGTGTTTAACGAAAAAGTGAAAGTGAATTCAGTATTCCTGCGGGATTCAACCGGTGTATCTGATTCTGTTCTCCTCTTATTTGGTGGGAAAGTATCCAGAGGTGGACTAGATGGTCACCTGAAGATGTTGGGAGGCTACTTGGAGTTTTTCATGAAACCTCAATTAGCTGAGACTTACTTAAGCTTAAAGAAGGAGCTGGAGGAACTTATACAGAGAAAACTTATGGATCCCAAATTGGATATTCAATCACATAACGAGCAGCTTCTTTCAGCTGTAAGATTGTTGGTGTCAGAGGACCAGTGTGATGGCAGATTTGTCTTTGGTCGTCAGGTGCTACTACCATCAAAAAAGGCAACTGACATGAAAAGTGGTGTTGGACCCGAGGCtcataatttcaaaaaccAGCTGCAAACATTACTTGTTAGGGCTGGACATGATCCGCCAAcctataaaacaaaacaactgaAAAACAATCAATTCCGCTCTACCGTCATATTCAATGGCTTGAATTTTGTTGGGAAGCCATGCAATAACAAGAAACTTGCAGAAATGGATGCTGCATCTGAGGCTGTTCTATGGTTAAAGGGGGATACACGTTCATCTTGTGATGATCTTGATCATGTGTCTATGCttctgaaaaagaacaaaaagaaaaagcagaagGCTTCCTTCAGTGGTGCTAAATGGAGTTA 3578 0.3952 MSCSSIFQGSTRTVMSRRGLIFLSSLKTHRALRPSLLFISMRNQAIGFRSFYYSPPKTVEVDREERQGTGFRQKTIALPFWHQQSSNYGRLAYRDVSSDESDVEFGSSQSQQQLGVPTLENIDEWRWKLTMLLRNKDEQEVVSREKKDRRDFEQLSALATRMGLYSRQYAKVVAISKVPLPNYRSDLDDKRPQREVVLPFGVHREVDSHLKAHLSQKSIRRGSLLDDSLHRSSNGGSIRSDEVIFEQPEPLTKNSAVMEKILRQKSLRLQNQQKDWQESPEGQKMLEFRRSLPAFKEKDALLKAIAENQVIVVSGETGCGKTTQLPQYILESEIEASRGAACSIICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGVLLRRLLVDRDLKGVSHVIIDEIHERGMNEDFLLIVLKELLRRRPELRLILMSATLNAELFSSYFGGAPTIHIPGFTYPVRVHFLENILEMTGYRLTPYNQIDDYGQEKKWKMQKQAQAFRKRKSEIASTVEDALEAANFKGYSLRTQESLSCWCPDSIGFNLIEHVLCHIVRKERPGAVLVFMTGWDDINSLKDQLQSHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEEGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVHDAFADYQLPELLRTPLQSLCLQIKTLQLGSISEFLARALQPPEPLSVQNAVEYLKTIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPIMTIVAGLSVKDPFLMPFDKKDLAESAKAQFASHDYSDHLALVRAYEGWKDAESQQAGYEYCWRNFLSAQTLRAIDSLKKQFFWLLKDIGLVDQNAENCNTWSHDEHLIRAVFCSGLFPGICSVVNKDKTIALKTMEDGQVLLYSNSVNAAVPRIPFPWLVFNEKVKVNSVFLRDSTGVSDSVLLLFGGKVSRGGLDGHLKMLGGYLEFFMKPQLAETYLSLKKELEELIQRKLMDPKLDIQSHNEQLLSAVRLLVSEDQCDGRFVFGRQVLLPSKKATDMKSGVGPEAHNFKNQLQTLLVRAGHDPPTYKTKQLKNNQFRSTVIFNGLNFVGKPCNNKKLAEMDAASEAVLWLKGDTRSSCDDLDHVSMLLKKNKKKKQKASFSGAKWS 1192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00852 1192 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 911 993 IPR011709 -
Bva04g00852 1192 Gene3D - 555 710 IPR027417 -
Bva04g00852 1192 Coils Coil 1014 1034 - -
Bva04g00852 1192 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 411 420 IPR002464 -
Bva04g00852 1192 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 302 469 IPR014001 -
Bva04g00852 1192 Pfam Helicase associated domain (HA2) 755 842 IPR007502 GO:0004386
Bva04g00852 1192 Pfam Helicase conserved C-terminal domain 560 691 IPR001650 -
Bva04g00852 1192 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 77 1090 - -
Bva04g00852 1192 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 296 890 IPR027417 -
Bva04g00852 1192 CDD SF2_C_RHA 473 700 - -
Bva04g00852 1192 PANTHER ATP-DEPENDENT RNA HELICASE 77 1090 - -
Bva04g00852 1192 Gene3D - 1077 1162 - -
Bva04g00852 1192 MobiDBLite consensus disorder prediction 225 245 - -
Bva04g00852 1192 Pfam Double-stranded RNA binding motif 1095 1155 IPR014720 -
Bva04g00852 1192 SMART helicmild6 586 692 IPR001650 -
Bva04g00852 1192 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 558 732 IPR001650 -
Bva04g00852 1192 Pfam DEAD/DEAH box helicase 301 453 IPR011545 GO:0003676|GO:0005524
Bva04g00852 1192 Gene3D - 245 470 IPR027417 -
Bva04g00852 1192 SUPERFAMILY dsRNA-binding domain-like 1083 1157 - -
Bva04g00852 1192 CDD DEXHc_RHA-like 308 468 - -
Bva04g00852 1192 Gene3D - 734 841 - -
Bva04g00852 1192 SMART DRBM_3 1094 1157 IPR014720 -
Bva04g00852 1192 SMART ultradead3 290 478 IPR014001 -
Bva04g00852 1192 SMART ha2_5 754 845 IPR007502 GO:0004386
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00852 Bva-Chr4 5593973 5604985 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00852 K14442 - gmx:100806141 1853.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00852 04 5593973 5604985 Bva04g00852 04 5593973 5604985 ECH