Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00823 ATGAGGTCTTCTTCTGAGACAATCAACATTGCTGCCAGTGCCCAGAGACTTGACGTTGATAATAGGATTTCTCTTCGCTTCTACTATAGGATCGCTGATAATGTCCTCAAACAGGCTGATATCTTTCGGGCAGAGAAGAATATTATAGATTTATATGTCCTGCTCCTAAGATTTTCTAGTTTGGTGTCTGAGACAATACCATGCCATCGAGAATATAAAGCATCTCCACAAAGTATGAAAGTTTCTTTGAAAAAGAAATTGTTAAATTCCTTGAATGAACTGGAAGAGTTGAAACCACTGGTGCAACAAAAGATCAATGAACTTAAAAGCAGGCAAGCATACCTGAAAAATGGATGTGGAAAATTTCATTCAAATGACTCAGTACAATTTGCTCCAGTGAAAAAGCAAACTTTGACTACTGTTGGTGAAATGAAGGCACTCAGACCAACTACTGGAAATAGCATTGCTTATCAAGGATCAAGGGGTCAGCAGTTTAATCATACCAGGCCAGTGGAAGAGTATATCCGAGGATTATCTCTTACTCTCCCCCGTCCAAGGGATGAAACTCTCTCAAGACATTCTATTCTAGGTCCTAATGGGCTTAAAGGACAATGGCAGCCACCTATAAATGATAAAGAGGTCAGGTATCCTACCAACATAGATATGTCTCCAGTTGAAATACCAAGATTGCAGCATTCCTTGGAAAATGGGTCTCtggataaaaaatatgatagcaTCTCAGGAAAAACTGGATCAGATTTGGAATCAGTTCTTATGCAGAGTGAGGATAGCCAGCCCAAATTAGTTCGTACCCAGAGTGAGGATTGCTGTGCCCAGAATGCTGAGGAACCTGgttctcttatttcttttgaaacaACAGAGGCCCCTGCACACACGGATATCATCAGACAGCCTTCTCCTCCCCCTGTACTTGCTGAAGTACAAGATTTGGTCCCTGCAGTATCACCTCATGTTACATGTAAAACAGAGACTCCTTCATCAGATAGCTTCATTCCTGGGGAGGCTCCCCTGCAACTTCACATTTCAACTTCTATGATGGAGAGTTTTATGAAGCTTGCCAAGTCGAATACTAACAAAAATCTAGAGACTTGTGGTGTCCTTGCAGGTTCTCTTaaaaacagaaaattttatattacagCTCTAATCATTCCAAAGCAGGAGTCAACGGCCAATTCTTGCCAGACCACAAACGAAGAGGAAATATTTGAAGTGCAGGATAAACTATCTCTTTTCCCTCTTGGCTGGATCCATACACATCCTACACAGTCTTGTTTCATGTCATCAATTGATCTGCATACCCATTACTCATATCAGATTATGCTGCCAGAAGCTGTTGCAATAGTCATGGCACCAAGAGATAGTTCGAGAAACCATGGCATTTTTCGGTTGACAGCCCCTGGTGGCATGTCGGTGATTAGACAATGCCAGCAACGTGGCTTCCATTCACATAATCAGCCTCCAGATGGTGGTCCCATTTACAAGACATGTACAGATGTTTACATGAACCcagatttaaaatttgatgtcaTTGATCTTCGATG 1562 0.4001 MRSSSETINIAASAQRLDVDNRISLRFYYRIADNVLKQADIFRAEKNIIDLYVLLLRFSSLVSETIPCHREYKASPQSMKVSLKKKLLNSLNELEELKPLVQQKINELKSRQAYLKNGCGKFHSNDSVQFAPVKKQTLTTVGEMKALRPTTGNSIAYQGSRGQQFNHTRPVEEYIRGLSLTLPRPRDETLSRHSILGPNGLKGQWQPPINDKEVRYPTNIDMSPVEIPRLQHSLENGSLDKKYDSISGKTGSDLESVLMQSEDSQPKLVRTQSEDCCAQNAEEPGSLISFETTEAPAHTDIIRQPSPPPVLAEVQDLVPAVSPHVTCKTETPSSDSFIPGEAPLQLHISTSMMESFMKLAKSNTNKNLETCGVLAGSLKNRKFYITALIIPKQESTANSCQTTNEEEIFEVQDKLSLFPLGWIHTHPTQSCFMSSIDLHTHYSYQIMLPEAVAIVMAPRDSSRNHGIFRLTAPGGMSVIRQCQQRGFHSHNQPPDGGPIYKTCTDVYMNPDLKFDVIDLR 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00823 520 Coils Coil 91 111 - -
Bva04g00823 520 SUPERFAMILY JAB1/MPN domain 345 476 - -
Bva04g00823 520 Gene3D - 1 118 - -
Bva04g00823 520 Gene3D Cytidine Deaminase, domain 2 330 520 - -
Bva04g00823 520 CDD MPN_AMSH_like 345 520 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Bva04g00823 520 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 343 449 IPR000555 GO:0005515|GO:0008233|GO:0008237
Bva04g00823 520 SMART pad1_6 345 473 IPR000555 GO:0005515|GO:0008233|GO:0008237
Bva04g00823 520 PANTHER AMSH-LIKE PROTEASE 2 520 - -
Bva04g00823 520 Pfam USP8 dimerisation domain 9 99 IPR015063 -
Bva04g00823 520 ProSiteProfiles MPN domain profile. 346 476 IPR037518 -
Bva04g00823 520 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 2 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00823 Bva-Chr4 5430033 5435930 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00823 K11866 - gmx:100804754 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00823 04 5430033 5435930 Bva04g00823 04 5430033 5435930 ECH