Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00779 ATGAATCGCCAGAAATCTATACTTTCCTTCTTTCAGAAATCCTCACAGCAGAGCCATGGTTCCTGCGACGAGCGAGCTCTCGATTCATCTGTTAAGAAAGCAAGCGATAGAGTTGCTGTCTCCAATCAGTGTCAGTCAGATGATTCGTCTGCTGAAGTCAGAGGAACAGACACACCGCCGGAGAAGGTGCCGCGTCAGATCTTGCCGGCGTCGTTCACTGCAAATGAGAAAAGCAATGGTCCTTCCCTGTTTTCGAGTATCATGCATAAATTTGTCAAGGTCCATGATGGCGCCGAAGCGAGACAGAGAAACCAACCTCTGAATGACATTTTGTCAAAAACATCACCAACATTTGGAGAATGTACTAACCTTAAAGGACTGGTTAAAGAAGAAGCAGTTTCTCAAGCTGCCAAAAAAGATAACGTCGTAATTACAAAGCAGAAGGCTGATCAAGAAAACGCTATCCCTATTGAAATTGATGATGATATTCCTGGACCAGAAACACCGGGGATGCAGCCTCTTGCATCTCATGCAAAGCGTAGTAGAGAGCTTGGTTCCAAGTTTGGCCCCTTGATTGATTCTGGCAAACGAGTTAAATTTCTTGATGATTCAACAGCATTTAACATGACTAAGAAGGAAGTAGATATAGCCAGCAAGTTTGAGTGGCTTGATCCTTCTCGAATCAGGGATGCTAATGGAAGAAGGGCTAATGATCCTCTATATGACCCGACAACACTTTATATACCACCAGAAGTGTTGAAAAAAATGTCAGCATCTCAAAAGCAGTACTGGAGTGTCAAATGCAAATACATGGATGTTGTGCTATTCTTCAAAGTGGGAAAATTTTATGAGCTTTACGAAATGGATGCTGAAATTGGCCATAAGGAGCTTGATTGGAAAATGACATTAAGTGGTGTGGGAAAATGTCGGCAGGTTGGTATCTCTGAAAGTGGAATTGATGATGCTGTTCAGAAATTGGTTGCTCGTGGATACAAGGTTGGACGAGTGGAACAGTTGGAGACATCTGAAGAAGCGAAAGCTAGGGGTGCTAATTCTgttattcaaagaaaattagttcAGGTAGTCACTCCATCAACCACAGTGGATGGTAATATTGGTCCTGATGCTGTTCATCTTCTTGTGATAAAAGAGGAGACAAACAACCTAGATAATGGCTCAGTTGTACATGGGTTTGCATTTGTTGATTGTGCTGCTCTTAGGTTTTGGGTTGGTTCCATCGATGATGATGCTTCCTGTTCTGCTTTGGGCGCTTTATTGATGCAAGTGTCACCTAAGGAAGTTATTTATGAAAGCAGAGGGTTGTCCAAAGAAGCTCAGAAAGCACTTAGAAAATACTCGTTAAATGgTTCTACAACACTACAATTGACTCCGGTGCAATCGATCACTGGTTTGGTTTCCTCTGAAGTTATTGACTTGATTCACTCAAAGAAATACTTTAAGGGGTTGTCTACTTCGTTGGATCATGTACTGAACAAAGTGATACATCGTGATATCACCTTGTGTGCTCTTGGTGGAATGATTAGCCATCTAGGTAGATTAATGTTAGATGATCTCCTACAAAATGGGGATATACATCCATATCAAGTTTATCGGGGCTTCCTAAAAATGGATGGCCAGACATTGGTCAATCTAGAGGTCTTCAGTAATAATGCTGAAGGTGGTCCATCAGgtacattatataaatatcttgACAACTGTATGACCTCATGTGGAAAGCGACTTTTGAGGAACTGGATCTGCCATCCCCTAAAAGATGCAGAAGGAATAAACAACAGGCTTGATGTGGTTGATGGGCTAATTGCTCGTCCTGAGGTTGTGTCACTTATTGATCAATCTCTTCGCAAGCTTCCAGATTTGGAACGATTGCTTGGACGAATCAAGACAAGCCTTCAGTCATCAGATTCTCTCTTAGTGCCCTTGcttggaagaaaaatattgaagcaGAGGGTGAAAGTGTTTGGGTCACTTGTAAAGGGTCTCCGCACTAGTCTGAGTTTATTGTTGCTTCTAGAGAAGGAAGAGCCTCTAATGTCATCCTTAACCAGAGTTTTTAAAGTTCCAATTCTGAATGGTAGTGATGGACTCGATCAATTTCTTACTCAATTTGAAGCAGCCATCGATAGTGACTTCCCCAACTACCAGAATCACGATGTGACAGACTCGGATGCCGAAACACTCTCAATActtgttgaattatttatgGAGAAACCTGCTGAGTGGTTTGAAGTTGTTCATGCCATTAATTGCATTGATGTATTAAGATCTTTTGCAGTCACTTCTACCCTTTCATGTGGAACTATGTCTAGGCCTGTCATCTTGTCTTCGTCAGAAACTAAAACATCTAATCAAGATTATAAAGGACCTGTCCTTATAACCAAGGGGCTCTGGCATCCATTTGCACTTGGACAGAATGGATGTTTGCCTGTCCCTAATGACATGGTCCTTGGTGAGACTAGAGATGGATATCATCCTCGAACATTACTGCTGACTGGACCAAACATGGGTGGGAAATCAACACTTCTGCGTGCTACCTGTCTAGCTGTTATAATGGCCCAGTTAGGCTGTTATGTGCCTTGTGAAAGTTGCGTTCTGTCAGTTGTGGATATAATCTTCACACGGCTTGGTGCTACTGATCGAATCATGACAGGCGAGAGCACCTTCTTTATTGAGTGCACAGAAACTGCATCGGTTCTTCAGAATGCTACTCAAGATTCTCTTGTTATTCTTGACGAACTGGGTCGGGGAACAAGTACTTTTGATGGCTATGCAATTGCATATGCAGTATTCCGCCATCTGATTGAAAAGGTCAACTGTCGCTTACTGTTTGCTACACACTACCATCCTCTTACAAAAGAGTTTGCCTCTCATCCACATGTTACACTGCAGCACATGGCTTGTGCTTTCAGGTCAGAATCTGATTGCTATTCCAAACGTGACAAGGAGTTAGTCTTTCTATATCGCCTCGCCTCTGGACCATGTCCAGAGAGCTATGGGTTGCAGGTTGCTCTAATGGCTGGGATCCCAGAAGAGACGGTCAATGTTGCTTCAAAGGCTAGCCAACAGATGAAAAAATCAATAGGAGAAAATTTTAGGTCTAGTGAACAGAGATCAGAATTCTCGAGTCTTCACGAGGAGTGGTTGAAGGCCTTATTGTCTATCTCACGAGTAGAGGATTGTAAATCTTTTGACGAAGATGCTTTTGatacattattttgtttgtggtGTGAACTAAAAACCTCATTTAGATCGGGAAACTTGGGACGTAGAGCGGGGTA 3296 0.4154 MNRQKSILSFFQKSSQQSHGSCDERALDSSVKKASDRVAVSNQCQSDDSSAEVRGTDTPPEKVPRQILPASFTANEKSNGPSLFSSIMHKFVKVHDGAEARQRNQPLNDILSKTSPTFGECTNLKGLVKEEAVSQAAKKDNVVITKQKADQENAIPIEIDDDIPGPETPGMQPLASHAKRSRELGSKFGPLIDSGKRVKFLDDSTAFNMTKKEVDIASKFEWLDPSRIRDANGRRANDPLYDPTTLYIPPEVLKKMSASQKQYWSVKCKYMDVVLFFKVGKFYELYEMDAEIGHKELDWKMTLSGVGKCRQVGISESGIDDAVQKLVARGYKVGRVEQLETSEEAKARGANSVIQRKLVQVVTPSTTVDGNIGPDAVHLLVIKEETNNLDNGSVVHGFAFVDCAALRFWVGSIDDDASCSALGALLMQVSPKEVIYESRGLSKEAQKALRKYSLNGSTTLQLTPVQSITGLVSSEVIDLIHSKKYFKGLSTSLDHVLNKVIHRDITLCALGGMISHLGRLMLDDLLQNGDIHPYQVYRGFLKMDGQTLVNLEVFSNNAEGGPSGTLYKYLDNCMTSCGKRLLRNWICHPLKDAEGINNRLDVVDGLIARPEVVSLIDQSLRKLPDLERLLGRIKTSLQSSDSLLVPLLGRKILKQRVKVFGSLVKGLRTSLSLLLLLEKEEPLMSSLTRVFKVPILNGSDGLDQFLTQFEAAIDSDFPNYQNHDVTDSDAETLSILVELFMEKPAEWFEVVHAINCIDVLRSFAVTSTLSCGTMSRPVILSSSETKTSNQDYKGPVLITKGLWHPFALGQNGCLPVPNDMVLGETRDGYHPRTLLLTGPNMGGKSTLLRATCLAVIMAQLGCYVPCESCVLSVVDIIFTRLGATDRIMTGESTFFIECTETASVLQNATQDSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRLLFATHYHPLTKEFASHPHVTLQHMACAFRSESDCYSKRDKELVFLYRLASGPCPESYGLQVALMAGIPEETVNVASKASQQMKKSIGENFRSSEQRSEFSSLHEEWLKALLSISRVEDCKSFDEDAFDTLFCLWCELKTSFRSGNLGRRAG 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00779 1098 MobiDBLite consensus disorder prediction 35 53 - -
Bva04g00779 1098 SMART DNAend 561 810 IPR007696 GO:0005524|GO:0006298|GO:0030983
Bva04g00779 1098 MobiDBLite consensus disorder prediction 158 180 - -
Bva04g00779 1098 Pfam MutS domain II 392 527 IPR007860 GO:0005524|GO:0006298|GO:0030983
Bva04g00779 1098 Gene3D DNA repair protein MutS, domain I 215 375 IPR016151 GO:0005524|GO:0006298|GO:0030983
Bva04g00779 1098 SMART mutATP5 831 1027 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bva04g00779 1098 ProSitePatterns DNA mismatch repair proteins mutS family signature. 912 928 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bva04g00779 1098 Pfam MutS domain V 835 1029 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bva04g00779 1098 Gene3D MutS, connector domain 377 542 IPR036678 GO:0005524|GO:0006298|GO:0030983
Bva04g00779 1098 Gene3D - 790 1072 IPR027417 -
Bva04g00779 1098 SUPERFAMILY DNA repair protein MutS, domain II 396 556 IPR036678 GO:0005524|GO:0006298|GO:0030983
Bva04g00779 1098 Pfam MutS domain III 546 764 IPR007696 GO:0005524|GO:0006298|GO:0030983
Bva04g00779 1098 PANTHER DNA MISMATCH REPAIR PROTEIN MSH7 242 1084 - -
Bva04g00779 1098 CDD ABC_MSH6_euk 800 1022 - -
Bva04g00779 1098 MobiDBLite consensus disorder prediction 1 24 - -
Bva04g00779 1098 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 793 1031 IPR027417 -
Bva04g00779 1098 SUPERFAMILY DNA repair protein MutS, domain III 544 767 IPR036187 -
Bva04g00779 1098 Gene3D - 543 770 - -
Bva04g00779 1098 PIRSF Msh6 1 730 IPR017261 GO:0006298|GO:0030983
Bva04g00779 1098 PIRSF Msh6 719 1070 IPR017261 GO:0006298|GO:0030983
Bva04g00779 1098 Pfam MutS domain I 259 369 IPR007695 GO:0005524|GO:0006298|GO:0030983
Bva04g00779 1098 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 242 1084 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Bva04g00779 1098 MobiDBLite consensus disorder prediction 1 61 - -
Bva04g00779 1098 SUPERFAMILY DNA repair protein MutS, domain I 245 366 IPR016151 GO:0005524|GO:0006298|GO:0030983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00779 Bva-Chr4 5086349 5093970 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00779 K08737 - gmx:100818859 1616.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00779 04 5086349 5093970 Bva04g00779 04 5086349 5093970 ECH