Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00204 ATGACAGAGCTTTGGAGCATATTAGAACGAAAATGCTTGTACCTTCTTCAGCAGAAGATCACAGTAGCTTCCCTCCTCCAAATCCATTGCTTTATGCTTCGAAACGCCCTGGAGAAAAACGTTAATCTCTTCACCAAGTTCATCGGAATCTGCGCTTCTCCGTCCCTTGTTGCTTCACGCGCCGACTCACTCGTTATTGTTCGACACGCCCGTCGTGTATTTGATCATAGACCCCATGAAGGAGATGTGTTCTTATGCAACACAATGATCAGTGCCCATGTAGCTATGAACCAATTCTTCGAGTCTTTCACTCTGTATAGAGACCTTAAGAGGGAGACGAGTTTCGCTCCTGATGGTTACACCTTGACGTCACTGGCAAAGTGTTGTACATTGCATATGGCCGTTAGGGAAGGAGAAGAGATACACGGGGATGTGTTTAAATGTGGCTTGTGCTCAAATTTGTATACTTCAACAGCTTTGGTTGATATGTATGTTAAGTTTGGAATTATGGCTAATGCTAGAAGggtgtttgatgaaatgtccGAGAGAAGTCAAGTATCATGGACAGCTCTTATTGTAGGGTATGCGAGATCTGGAGATATGGAAGAAGCAAGCATACTTTTTACTCATATGCCAGATAAAGACACTGCTGCTTTCAATGCAATGATTGATGTTTACACAAAATTAGGAAGGATGGGTGTGGCTCAGGATTTGTTTGACAAATTGCCCTATAAAAATGTGATTTCTTGGACAAGTATGATTTCGGGGTATTGCCATAACGGTGATCTTGAATCTGCGAGGTTGCTGTTTGATATCATGCCGGAGAAGAACTTGTTTTCTTGGAATGCAATGATTGGTGGCTATTGCCAAAATAAACAACTACTAGAAGCATTAAAACTGTTTCACAAAATGCAGTTGTGCAcatcattggaaccaaatgaAGTAACCATTACAAGTATTCTTCCTGCCATTGCTGATATGGGTGCTTTGGATTTGGGTTGTTGGATTCACAAGTTTGCCCAAGGGAAGAAGTTTGATAAAGCTACCAATGTCTGCACGGCCCTAATTGATATGTATGCAAAATGTGGTGAAATTACAAAAGCCAAATTACTTTTTGATGAGATGCCTGTAAAAGCAACAGCTTCCTGGAATGCTTTAATAAATGGTTTTGCAGTCAATGGTCGTGCAAAGGAAGCTTTAGAGCTATTTGTAGTGATGCTACAGGAAGGTTCAAAACCTAATGCGATAACTATGATGGGTGTATTATCTGCTTGCAACCATTGTGGTCTGGTGGACGAAGGAAGAAGATGGTTCAACACTATGGAGAAACTTGGTATTACTCCGCAGATTGAGCATTATGGTTGTATGGTTGATCTTCTTGGAAGGGCAGGATTCTTGGACGAGGCTGAAAAACTGATCGAGAGCATGCCTTACAATgctaatgaaataatattgaGTTCTTTTCTATTTGCATGTGGGCACTTTCAAGATGTTGAAAGGGCAGAAAGAGTGCTAAAAGAGACAGTGAAAATGGAAGAGGGGAACGGTGGGAATTATGTGATGTTGAGAAATCTGTATGCCATAAAGCAAAGGTGGACGAGTGTGGAGGATGTTAAacagatgatgaagaaaagtggATCCAGTAAGGAGGTTGGTTGCAGTGTTATTGAAGTTGATGGTAGCTTTAGGGATTTTGTGGCTGGTGATAACTTGCATCCGCATATAGATACTATTCACTTAACCTTGGGGCAATTATGGAACCACATGAGGGTAGATATGGGAGAGAGCCTGATGTA 1796 0.3987 MTELWSILERKCLYLLQQKITVASLLQIHCFMLRNALEKNVNLFTKFIGICASPSLVASRADSLVIVRHARRVFDHRPHEGDVFLCNTMISAHVAMNQFFESFTLYRDLKRETSFAPDGYTLTSLAKCCTLHMAVREGEEIHGDVFKCGLCSNLYTSTALVDMYVKFGIMANARRVFDEMSERSQVSWTALIVGYARSGDMEEASILFTHMPDKDTAAFNAMIDVYTKLGRMGVAQDLFDKLPYKNVISWTSMISGYCHNGDLESARLLFDIMPEKNLFSWNAMIGGYCQNKQLLEALKLFHKMQLCTSLEPNEVTITSILPAIADMGALDLGCWIHKFAQGKKFDKATNVCTALIDMYAKCGEITKAKLLFDEMPVKATASWNALINGFAVNGRAKEALELFVVMLQEGSKPNAITMMGVLSACNHCGLVDEGRRWFNTMEKLGITPQIEHYGCMVDLLGRAGFLDEAEKLIESMPYNANEIILSSFLFACGHFQDVERAERVLKETVKMEEGNGGNYVMLRNLYAIKQRWTSVEDVKQMMKKSGSSKEVGCSVIEVDGSFRDFVAGDNLHPHIDTIHLTLGQLWNHMRVDMGESLM 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00204 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Bva04g00204 598 TIGRFAM PPR: pentatricopeptide repeat domain 248 277 IPR002885 -
Bva04g00204 598 TIGRFAM PPR: pentatricopeptide repeat domain 351 375 IPR002885 -
Bva04g00204 598 TIGRFAM PPR: pentatricopeptide repeat domain 279 313 IPR002885 -
Bva04g00204 598 TIGRFAM PPR: pentatricopeptide repeat domain 382 415 IPR002885 -
Bva04g00204 598 Pfam PPR repeat family 276 323 IPR002885 -
Bva04g00204 598 Pfam PPR repeat family 380 425 IPR002885 -
Bva04g00204 598 Pfam PPR repeat 246 273 IPR002885 -
Bva04g00204 598 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 8 580 - -
Bva04g00204 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Bva04g00204 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Bva04g00204 598 PANTHER OS07G0578800 PROTEIN-RELATED 8 580 IPR045215 GO:0003723|GO:0009451
Bva04g00204 598 Pfam PPR repeat 218 245 IPR002885 -
Bva04g00204 598 Pfam PPR repeat 352 376 IPR002885 -
Bva04g00204 598 Pfam PPR repeat 156 183 IPR002885 -
Bva04g00204 598 Pfam PPR repeat 452 476 IPR002885 -
Bva04g00204 598 Pfam PPR repeat 86 112 IPR002885 -
Bva04g00204 598 Pfam PPR repeat 186 214 IPR002885 -
Bva04g00204 598 Gene3D Tetratricopeptide repeat domain 96 244 IPR011990 GO:0005515
Bva04g00204 598 Gene3D Tetratricopeptide repeat domain 350 563 IPR011990 GO:0005515
Bva04g00204 598 Gene3D Tetratricopeptide repeat domain 245 349 IPR011990 GO:0005515
Bva04g00204 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Bva04g00204 598 Pfam E motif 495 557 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00204 Bva-Chr4 1229736 1231997 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00204 50 590 Glycoside Hydrolase AT3G49170 32.975 8.29e-83 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00204 - - aprc:113862517 811.986