Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01467 ATGGCTGCGCATCCGAAAAATGTGGGAATCCTTGCCATGGACATCTATTTCCCTCCTACTTGCGTGCAGCAGGAAGCTTTGGAGGCTCATGATGGCGCaagcaaaggaaaatataCTATTGGGCTTGGACAAGATTGTATGGCATTCTGCAGTGAGGTAGAAGATGTTATCTCAATGAGCTTGACAGTTGTTACTTCACTTCttggaaaatttaaaatcgATCCAAAGCAAATTGGACGCTTGGAAGTTGGGAGTGAGACAGTAATAGACAAGAGCAAATCCATTAAGACCTTCCTTATGCAAATTTTCGAGGAGAGTGGTAACACTGACATCGAAGGCGTTGATTCAACAAATGCATGCTATGGTGGAACAGCAGCTTTGTTCAATTGTGCAAATTGGGTGGAGAGTACTTCATGGGATGGGCGCTATGGACTTGTCGTATGTACAGACAGTGCGGTATACGCAGAAGGACCTGCCCGTCCCACTGGAGGAGCAGCTGCTATTGCCATGCTGATAGGGCCGGATGCTCCCATTGTGTTCGAAAGCAAGTTCAGAGCCAGTCATATGTCTCATGCCTATGATTTTTACAAGCCAAACCTTGCAAGTGAATACCCGgTTGTTGATGGAAAGCTCTCTCAGACTTGTTATCTCATGGCACTTGATTCCTGCTACAAGCGCTTTTGCGAGAAatttgaaaaattagaaggGAGGCCATTTTCAATATCAGATTCTGattattttgtgtttcattCTCCATATAACAAGCTTGTACAGAAAAGTTTTGGTCGGCTATACTTCAATGATTTCCTTAGAAATCCCAGTTTTGTTGATGAAGTTGCCAGAGGAACCCTAGCACCATTCGCATCCTTATCTGGTGATGAGAGCTATCAGAGCCGTGATCTTGAAAAGGCAAACCAGCAAGCTGCTAAACAGATATATAATGTGAAGGTGCAACCAACCACATTAATCCCAAAACAAGTTGGTAACATGTACACTGCATCACTTTATGCAGCATTTGCATCTCTCCTTCACAATAAACATAGCTCACTGGCAGGGAAGCGGGTAGTTATGTTCTCGTATGGAAGTGGTTTAACAGCGACAATGTTCTCCTTCCGACTTCAAGAATGTCAACATCCATTTAGCTTGTCAAATATAGTAGCAGTGATGAATGTTTCTGACAAATTGAAGCAAAGGATTGAGGTACCTCCAGAAAAATTTGTTCAAACTTTGAAGATCATGGAGCACCGTTATGGGGCAAAGGACTTCGTGACAAGCAAGGACTGCAGTCTCTTGCCTCCTGGCACCTACTATCTCACCGAAGTCGATTCAATGTACCGAAGATTTTATGCCAAGACATCTGACCACACCAACACTCCCAAACCTGATAATAATTTGCATGCTAATGGAGGGGGAAAATTGCCTGTTCTGGAGATTTTAGGctttttattttatggacTTAGACTGAACCACGTCACATA 1478 0.4161 MAAHPKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCMAFCSEVEDVISMSLTVVTSLLGKFKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEESGNTDIEGVDSTNACYGGTAALFNCANWVESTSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPIVFESKFRASHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKRFCEKFEKLEGRPFSISDSDYFVFHSPYNKLVQKSFGRLYFNDFLRNPSFVDEVARGTLAPFASLSGDESYQSRDLEKANQQAAKQIYNVKVQPTTLIPKQVGNMYTASLYAAFASLLHNKHSSLAGKRVVMFSYGSGLTATMFSFRLQECQHPFSLSNIVAVMNVSDKLKQRIEVPPEKFVQTLKIMEHRYGAKDFVTSKDCSLLPPGTYYLTEVDSMYRRFYAKTSDHTNTPKPDNNLHANAL 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01467 470 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 5 177 IPR013528 -
Bva03g01467 470 SUPERFAMILY Thiolase-like 178 450 IPR016039 GO:0016746
Bva03g01467 470 SUPERFAMILY Thiolase-like 7 175 IPR016039 GO:0016746
Bva03g01467 470 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 178 451 IPR013746 GO:0004421|GO:0006084|GO:0010142
Bva03g01467 470 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 454 - -
Bva03g01467 470 TIGRFAM HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase 5 451 IPR010122 GO:0004421|GO:0008299
Bva03g01467 470 CDD init_cond_enzymes 7 371 - -
Bva03g01467 470 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 108 123 IPR000590 GO:0004421|GO:0008299
Bva03g01467 470 Gene3D - 2 453 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01467 Bva-Chr3 13916859 13922337 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01467 K01641 - gmx:100794889 832.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01467 03 13916859 13922337 Bva03g01467 03 13916859 13922337 ECH