Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01438 ATGCGAATCTTGTTGACCTATACAGCCCATATCTTCAAGCGCGAGACTGCGAAACTTGAGCGTTCTGCGTTCTTCAATGTCAATTTCACAAGAGGAATGTCTCTGTTCACTGCCATTCCCAGAAACCTTCAAATAGTTCCAGATCATGGCTTCGACAACTTCATGGAGGTCGAGAAGAAAATGTGCAAATTTTTTCGAAATTTAGGACCTTCTTCTCTCTCGGCCCAACCAAGCAATCTTAATTTCTCGCCTATAAGCCCTCTCTCGCGGCATTGGCATCAAGCAGCACGAAATCGGCGGGTTCTCTTTTGCCGCTTGACTCGGAAGGCCAATCTCCAAGTTGGGCAGGAAAGGAAGGTTGTGATTGCACAAATCCCAGAAGCTGTAACGCGCCCTAGGAAGCTCCTCATGATGTCTAAAAATGGAGTTGAGCTGGTGGAGAGAGACAAAAGCTTAGCTGTGTGTGCCATGGAGAAAGCTAGGGAAAAGGAGCATAAGGAGAAAGTTGATGCTGAAAATGTTAGATAttcatttcttataaattttccATCAGGGTTTAAGATTGGGGTTTTTCATAGAATTGCTGTGTGGAAGTGGCAGCGGCTTCCTTACTGGTCACCCTATGAAGATGTTTCTGGGTATGATTTGCGATCAATTGAGGCTAAGAAGCAAATGGAGAAGAGGGTAGTTTCCACAATCCATGAATTGCTGTCTCTGACAGTGGAGAAGAAAATTACTCTACAGAGGATTGCACATTTTCGGACATCGATGAATTTGCCAAAGAAGTTGAAAGACTTTCTACTTCAGCATCGGGGGATATTTTATATCTCCACCAAAGGAAATCTCAATACAGTTTTCCTTAGGGAGGAATATAGAAAGGGAGAGTTGATAGAGCctaatgatttatattttgcaAGAAGGAAACTAGctgaatttgttttattgaatCCTAGGAAAGCAAAAGTTGATGGAGAATTGGTTTGCTCCAGGGGAGGcagagaagatgatgatggcGACCTGTGGCTTATGGCATGTGCTTCTTCTTCGAATTATTACCAAGACTTAAGGGTGGAGATAGTAGGGTGCAAGATAGGGATGGACAAGATGATTTG 1112 0.411 MRILLTYTAHIFKRETAKLERSAFFNVNFTRGMSLFTAIPRNLQIVPDHGFDNFMEVEKKMCKFFRNLGPSSLSAQPSNLNFSPISPLSRHWHQAARRVELVERDKSLAVCAMEKAREKEHKEKVDAENVRYSFLINFPSGFKIGVFHRIAVWKWQRLPYWSPYEDVSGYDLRSIEAKKQMEKRVVSTIHELLSLTVEKKITLQRIAHFRTSMNLPKKLKDFLLQHRGIFYISTKGNLNTVFLREEYRKGELIEPNDLYFARRKLAEFVLLNPRKAKVDGELVCSRGGREDDDGDLWLMACASSSNYYQDLRVEIVGCKIGMDKMI 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01438 326 PANTHER PROTEIN ROOT PRIMORDIUM DEFECTIVE 1 18 83 IPR040295 -
Bva03g01438 326 PANTHER PROTEIN ROOT PRIMORDIUM DEFECTIVE 1 97 299 IPR040295 -
Bva03g01438 326 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 97 299 IPR045040 GO:0003723
Bva03g01438 326 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 18 83 IPR045040 GO:0003723
Bva03g01438 326 Pfam Plant organelle RNA recognition domain 96 271 IPR021099 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01438 Bva-Chr3 13679356 13681236 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01438 - - ini:109177159 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01438 03 13679356 13681236 Bva03g01438 03 13679356 13681236 ECH