Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01437 ATGGGTAATTCTTTTGGGTGCTCAGCTTCCGGTGAGAGGTTGGTATCGGCCGCCAGGGACGGCGATTTGGTTGAGGCCAAGATGCTTTTGGATTGTAACCCGTGTCTTGCCAAGTACTCCACTTTTGGTGGCCTCAATTCCCCTCTTCATTTTGCAGCTGCCAAGGGCCATAACGagATTGTGGCATTGTTGCTTGAGAATGGAGCTGATGTGAATTCAAGAAATTACTGCGGGCAGACGGCATTGATGCAAGCTTGTAGATATGGGCATTGGGAAGTTGTACAGACGCTTCTGCTTTTTAGATGCAATGTTATGAGAGCAGATTATCTTAGTGGAAGGACAGCTCTTCACTTTGCTGCTGTTAATGGGCATGTAAGATGTATAAGGCTCGTTGTGGCTGACTTTGTTCCCAGTGCTCCTTATGAAGCTATACAGACCCGCACAGATGCTGACAGAGATGATGGTTCAAATGTAAGGAGCAAACATGACCAAAGTGCGTTGTCCAAGTTTGTAAATAAGGCAGCTGATGGTGGTATTACTGCCCTTCACATGGCTGCACTGAATGGATATTTTGATTGCGTACAACTCCTACTTGATCTTAATGCAAATGTATCTGCCGTGACATTTCATTATGGAACATCTATGGATTTAATagGTGCTGGAAGCACTCCATTGCACTATGCTGCTTGTGGGGGCAATTTAAAATGCTGTCAGATCCTCCTTGCAAGAGGTGCTAGTAGAATGGCTTTGAATTGCAATGGGTGGCTTCCTCTTGATGTTGCTAGGATGTGGGGGCGTCATTGGCTTGAACCATTGCTGGCACCCAGTTCTGATGCTACTATACCGACTTTCCCCCCTTCTAATTACTTGTCCTTGCCTCTCATGAGTGTTCTCAACATAGCAAGAGAGTGCGGATTGCAGGCGTCTACAACCTCCTCTGATGACATTGATTTCTGTGCTGTCTGCCTGGAGAGACCATGTTCAGTCGCTGCAGAAGGATGTGGACATGAGCTTTGTGTAAGATGTGCACTCTATCTTTGCTCAACAAGCAATATTCCTTCTGAAGTGCTTGGCCCTCCTGGCTCCATCCCTTGCCCTCTTTGTAGACATGGAATTGTCTCCTTCGTCAAACTACCGGGTTCCCccgtaaaagaaaataaactacatGTATCTCTTGGCTTGTGCACCCCATGCATGCTACATCCACGTGATGCAGATCAACCATCTCTTGCGCAAAGACCTGACATTCGCAGAAACCGTGTAGCTTCTGTCCCTTCGGATATACTCTGTCCTGTCACATGTAGTCCATTTCCGTCTGTGGCGATTCCTCTGTGCACCTGCAATGACGGTCCATGTCCACCATTTGAACCCCAGGAAGTAGAAACGCAAGATGGATCACCTCATCATTCACAAGCATCAACGATAGATCAAGATAAAATGGAAGGTCCAAGACTAGAGAAAACAACTTGTTCAAGCATGTTTTGGAATAGAAGAAGTTGTAGCAGAGAGAACCAGTGCAATTCAGAAATAAATGCCTG 1538 0.4564 MGNSFGCSASGERLVSAARDGDLVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVMRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSAPYEAIQTRTDADRDDGSNVRSKHDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLNANVSAVTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLARGASRMALNCNGWLPLDVARMWGRHWLEPLLAPSSDATIPTFPPSNYLSLPLMSVLNIARECGLQASTTSSDDIDFCAVCLERPCSVAAEGCGHELCVRCALYLCSTSNIPSEVLGPPGSIPCPLCRHGIVSFVKLPGSPVKENKLHVSLGLCTPCMLHPRDADQPSLAQRPDIRRNRVASVPSDILCPVTCSPFPSVAIPLCTCNDGPCPPFEPQEVETQDGSPHHSQASTIDQDKMEGPRLEKTTCSSMFWNRRSCSRENQCNSEINA 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01437 512 MobiDBLite consensus disorder prediction 456 483 - -
Bva03g01437 512 SMART ANK_2a 177 206 IPR002110 GO:0005515
Bva03g01437 512 SMART ANK_2a 220 249 IPR002110 GO:0005515
Bva03g01437 512 SMART ANK_2a 77 106 IPR002110 GO:0005515
Bva03g01437 512 SMART ANK_2a 111 141 IPR002110 GO:0005515
Bva03g01437 512 SMART ANK_2a 44 73 IPR002110 GO:0005515
Bva03g01437 512 ProSitePatterns Zinc finger RING-type signature. 334 343 IPR017907 -
Bva03g01437 512 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
Bva03g01437 512 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Bva03g01437 512 Pfam Ankyrin repeats (3 copies) 213 268 IPR002110 GO:0005515
Bva03g01437 512 Gene3D - 144 269 IPR036770 -
Bva03g01437 512 Pfam Ankyrin repeat 112 130 IPR002110 GO:0005515
Bva03g01437 512 Pfam Ankyrin repeat 178 208 IPR002110 GO:0005515
Bva03g01437 512 PANTHER HOMEOBOX PROTEIN WARIAI 1 512 - -
Bva03g01437 512 Gene3D - 8 143 IPR036770 -
Bva03g01437 512 ProSiteProfiles Ankyrin repeat profile. 220 252 IPR002110 GO:0005515
Bva03g01437 512 SUPERFAMILY RING/U-box 313 375 - -
Bva03g01437 512 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Bva03g01437 512 Pfam Ankyrin repeats (many copies) 46 98 IPR002110 GO:0005515
Bva03g01437 512 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 512 - -
Bva03g01437 512 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 389 IPR013083 -
Bva03g01437 512 PRINTS Ankyrin repeat signature 112 127 IPR002110 GO:0005515
Bva03g01437 512 PRINTS Ankyrin repeat signature 193 207 IPR002110 GO:0005515
Bva03g01437 512 ProSiteProfiles Zinc finger RING-type profile. 319 369 IPR001841 -
Bva03g01437 512 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Bva03g01437 512 ProSiteProfiles Ankyrin repeat region circular profile. 220 246 - -
Bva03g01437 512 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Bva03g01437 512 SUPERFAMILY Ankyrin repeat 14 273 IPR036770 -
Bva03g01437 512 ProSiteProfiles Ankyrin repeat region circular profile. 177 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01437 Bva-Chr3 13665086 13670650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01437 14 325 Miscellaneous Gene Families AT2G31820 27.987 1.58e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01437 K19044 - gmx:100793886 967.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01437 03 13665086 13670650 Bva03g01437 03 13665086 13670650 ECH