LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva03g01420	ATGCTTTTCACTTCAAAGGGTAGTCTTGTACCATCCACCAAATCATCTCGCAGGTGGCGTCAAGCTTCCCCTGCTGGGTTTTTTAAGCTCAATACGGATGGCAGTGCTTTGGGACGAAACAGGCAGATGAAGCGCGGGAACCTCTCAATTCCGATATCGCCGTTGGTGCGCGCCACCGTTTACATGGGAAAGCATAAGCAACCAGTCATCTCCCGCTACTTTGCGCCCAAACCCAAATCTCCGGCGGCCAATGATTCATCTTCTTCTCGCCCAAAACCTCCAACCCCATCTCCCAAAATCTCGGCAACTGTCACTTTCTCTCCCTCCAAACGCCGCCTCACTTCTCAGCTAACGTCACCTTTTAAACCGTCCAAAATCCCTAAACTTTCTCCGCACACCCAAAACCCTGTTCCTTCTTTACCTAACCCCTCCCTCCACCAGAAATTTCTCCAGAAGTTCCTGGAACCTTGCCATGACGCATCAGAAAACCCCAAACTTCCCTCGTCTGAACCAATAAAGTATACACCTTTAGAGCAACAAGTTGTGGAACTGAAGAGGAAATACCCAGATGTCCTTTTGATGGTTGAAGTTGGTTATAAGTATCGTTTTTTCGGTGAAGATGCTGAGATTGCAGCTAGAGTGTTGGCGATATATGCCCATATGGATCATAATTTCATGACTGCTAGTATACCAACTTTTCGACTAAATGTTCATGTGAGGAGGCTTGTCAATGCTGGATACAAAGTGGGTGTGGTTAAGCAGACTGAGACTGCTGCCATTAAGGCTCATGGATCAAACAAGTTAGGTCCCTTTTGTCGAGGATTATCTGCATTGTACACAAAGGCGACATTAGAGGCAGCTGAAGATTTGGGGGGAGGGGAAGAGGGGTGTGGAGCAGATAGTAATTACTTGCTTTGTATTGTGGAGAAGAGTATTTTGGGAGAAAAAACGAATTGTGGATTGGAAGATGGGTTTGATGTGAAGATCGGAATTATTGCTGTGGAGATATCAACAGGGGATGTTATTTATGGGGAGTTTAAGGATAACTTTTTAAGGAGTGCTCTCGAGGCTGTAATTTTGAGCTTGTCTCCAGCCGAGTTGCTTCTTGGGGAGCCTCTTTCCAAACAAACAGAGAAGTTATTACTGGATTATGCTGGGCCTGCTTCAAATGTTCGAGTGGAGCATGCCTCCCGAGACTGCTTCACTGATGGAGGTGCTCTTGCTGAAGTTGTGGCTTCCTATGAGAACATGGGTATGGGCAATCAAACAGATACAATGCAAAGCCATGAGTTGTCAGATTACAGAAATCATCAATTGGTAATTAAGGAGATAATGGGCATGCCGGATTTAGCTGTCCAAGCTATGGCATTAACAATTCGTCACTTAAAGCAATTTGGATTTGAAAGAATTTTTGGTCTAGGAGCTTCTTTGAGGCCACTGTCAAGCAATACGGAAATGACCCTCTCAGCCAATGCACTGCAACAACTGGAGgttttaaaaaataacagtgATGGATCTGAGACTGGCTCCTTGCTGCAGATTATGAATCATACACTTACTATATCTGGTTCCAGGCTTCTTAGGCACTGGGTAACTCATCCATTGTGTGATGAAAACATGATTTTGGCTCGTCTAGATGCTGTGTTAGAGATTGCAGAATCCATGGGTTCTTGTAATGGCTTGCAGAATCTTGGATATCTTGAGAAAGATTCAGATGTAGCTGTTGTACAACCTGAGTTAGCTTACATACTTTCTTCAGTTTTGACAAATCTGGGTCGGGCCCCTGATATACAACGTGGGATCACAAGAATTTTTCATCGGACTGCTACCCCATCTGAGTTCATTGCAGTTATTCAAGCTATTTTGTCTGCTGGAAAACAGCTTCGGCAACTTAACATTGAAGGGGTGGAGAATAACATAGTCAGAACAAAGATTTTGCACTCCAatctgttaaaaaaattgattttgactGCTTCGTCTGCCAGTATTATTGGCAATGCTGCAAAATTATTGTCTTCTCTAGATAAAGACTCTGCTGGTCAAGGAGATCTAACAAACTTGATCATTGTATCTGATGGACAATTTCCTGAGGTTGTTAGAGCCCGAAAAGCTTTTCAGTTGGCGGTTGAAGAATTAGACTCTTTGATTGGCTTGTACCGCAAACAGCTCAGGATGCACAGTTTGGAATTTATGAGTGTTTCTGGAATAACTCATTTGATAGAGTTATCTGCAGATGTAAAGGTACCTACAAATTGGGTTAAGGTGAATAGTACAAAGAAAACAACTCGATACCACCCTCCTGAAGTATTGGCAGCATTGGACAAGTTATCATTAGCCAAAGAAGAGCTTACAATTGCCTGCCGTGCTGCTTGGGATAGCTTCCTGCAGGACTTTAGTAAATACTATGCTGAGTTCCAAGCTTCTGTTCAAGCACTAGCTGCTTTGGATTGTTTGCATTCATTTGCTATTCTTTCACGAAATAAgAATTATGTTCGCCCAGCCTTTGTAGATGATGATGAGCCTGTTCAGATACAAATCTGTTCTGGTCGACATCCGGTCTTAGAGATTACCTTACAAGACAATTTTGTTCCAAATGATACATATATGCACGCAGAGAGTGAGTACTGTCAAATTGTTACTGGACCCAACATGGGAGGAAAGAGTTGCTATATTCGCCAGGTTGCGCTGATTGCTATAATGGCTCAGGTTGGTTCCTTTGTACCAGCATCATCAGCAAAACTACATGTGCTTGATGGTATCTACACCCGGATGGGAGCTTCTGATAGTATTCAGCGAGGGAGAAGCACCTTCCTAGAAGAACTAAGCGAAACTTCACACATACTTCAGCATTGCACAGGAAGTTCCCTGGTTATCATTGATGAGCTTGGGAGAGGTACAAGTACTCATGATGGTATGGCTATTGCCTATGCAACATTGCATAATCTgctggagaagaaaaaatgcatgGTCCTCTTTGTTACTCACTATCCAGAGATTGCCAAGATCAAAACGGACTTCCCAGGCTCTGTGGGGGCGTACCATGTGTCATATCTGACCTCAAATGCTATCACAAGTGAGAAATCCACGTCAGGTCATGAAGATATCACTTATCTATACAAGCTTGCCCCTGGTATTGCAGAGAGGAGTTTCGGATTCAAGGTGGCAGAGCTTGCGCAGCTACCTTTGCGTTGCATTGGCCGAGCCATTGTTATGGCTTCCCGATTAGAAGCAGTTGTAAACAGTAGAACACATGGTAGATCAAGAGAGGGAATGCTGTTGGATGCACAGGGGATTGATCAAGAACAAGAATTACAACAATTTATGTCTCAGTCACATTATTCTTCACCTGAAGAAATTGGTAGCGCTTTCAAGGAATTCTTTTCAACCTTAAAAGCTGCAGTACCAGATTATGACCTTGCAAAAGGCTTCAAGTGTTTGGAGGATGCTAGAAGCATTGCTATGGAATTACTTGGCAGaTG	3479	0.4286	MLFTSKGSLVPSTKSSRRWRQASPAGFFKLNTDGSALGRNRQMKRGNLSIPISPLVRATVYMGKHKQPVISRYFAPKPKSPAANDSSSSRPKPPTPSPKISATVTFSPSKRRLTSQLTSPFKPSKIPKLSPHTQNPVPSLPNPSLHQKFLQKFLEPCHDASENPKLPSSEPIKYTPLEQQVVELKRKYPDVLLMVEVGYKYRFFGEDAEIAARVLAIYAHMDHNFMTASIPTFRLNVHVRRLVNAGYKVGVVKQTETAAIKAHGSNKLGPFCRGLSALYTKATLEAAEDLGGGEEGCGADSNYLLCIVEKSILGEKTNCGLEDGFDVKIGIIAVEISTGDVIYGEFKDNFLRSALEAVILSLSPAELLLGEPLSKQTEKLLLDYAGPASNVRVEHASRDCFTDGGALAEVVASYENMGMGNQTDTMQSHELSDYRNHQLVIKEIMGMPDLAVQAMALTIRHLKQFGFERIFGLGASLRPLSSNTEMTLSANALQQLEVLKNNSDGSETGSLLQIMNHTLTISGSRLLRHWVTHPLCDENMILARLDAVLEIAESMGSCNGLQNLGYLEKDSDVAVVQPELAYILSSVLTNLGRAPDIQRGITRIFHRTATPSEFIAVIQAILSAGKQLRQLNIEGVENNIVRTKILHSNLLKKLILTASSASIIGNAAKLLSSLDKDSAGQGDLTNLIIVSDGQFPEVVRARKAFQLAVEELDSLIGLYRKQLRMHSLEFMSVSGITHLIELSADVKVPTNWVKVNSTKKTTRYHPPEVLAALDKLSLAKEELTIACRAAWDSFLQDFSKYYAEFQASVQALAALDCLHSFAILSRNKNYVRPAFVDDDEPVQIQICSGRHPVLEITLQDNFVPNDTYMHAESEYCQIVTGPNMGGKSCYIRQVALIAIMAQVGSFVPASSAKLHVLDGIYTRMGASDSIQRGRSTFLEELSETSHILQHCTGSSLVIIDELGRGTSTHDGMAIAYATLHNLLEKKKCMVLFVTHYPEIAKIKTDFPGSVGAYHVSYLTSNAITSEKSTSGHEDITYLYKLAPGIAERSFGFKVAELAQLPLRCIGRAIVMASRLEAVVNSRTHGRSREGMLLDAQGIDQEQELQQFMSQSHYSSPEEIGSAFKEFFSTLKAAVPDYDLAKGFKCLEDARSIAMELLGR	1159

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Bva03g01420	1159	SUPERFAMILY	DNA repair protein MutS, domain II	300	501	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Bva03g01420	1159	SUPERFAMILY	DNA repair protein MutS, domain III	490	828	IPR036187	-
Bva03g01420	1159	MobiDBLite	consensus disorder prediction	1	20	-	-
Bva03g01420	1159	Gene3D	-	830	1114	IPR027417	-
Bva03g01420	1159	MobiDBLite	consensus disorder prediction	99	142	-	-
Bva03g01420	1159	Gene3D	-	488	822	-	-
Bva03g01420	1159	SMART	mutATP5	874	1073	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Bva03g01420	1159	Pfam	MutS domain I	175	286	IPR007695	GO:0005524\|GO:0006298\|GO:0030983
Bva03g01420	1159	SMART	DNAend	506	857	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Bva03g01420	1159	Pfam	MutS domain III	491	822	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Bva03g01420	1159	PANTHER	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	142	1136	IPR045076	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664
Bva03g01420	1159	ProSitePatterns	DNA mismatch repair proteins mutS family signature.	955	971	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Bva03g01420	1159	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	830	1076	IPR027417	-
Bva03g01420	1159	Gene3D	-	672	798	-	-
Bva03g01420	1159	PIRSF	Msh6	151	1134	IPR017261	GO:0006298\|GO:0030983
Bva03g01420	1159	MobiDBLite	consensus disorder prediction	71	142	-	-
Bva03g01420	1159	Pfam	MutS domain II	302	395	IPR007860	GO:0005524\|GO:0006298\|GO:0030983
Bva03g01420	1159	Gene3D	DNA repair protein MutS, domain I	167	291	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Bva03g01420	1159	PANTHER	DNA MISMATCH REPAIR PROTEIN MSH3	142	1136	-	-
Bva03g01420	1159	SUPERFAMILY	DNA repair protein MutS, domain I	166	283	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Bva03g01420	1159	MobiDBLite	consensus disorder prediction	1	21	-	-
Bva03g01420	1159	Gene3D	MutS, connector domain	298	485	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Bva03g01420	1159	Pfam	MutS domain V	877	1075	IPR000432	GO:0005524\|GO:0006298\|GO:0030983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva03g01420	Bva-Chr3	13557353	13568867	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva03g01420	K08736		-	gmx:100789883	1546.95

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva03g01420	03	13557353	13568867	Bva03g01420	03	13557353	13568867	ECH