Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01419 ATGGGAGCCTTTCGTTGGTCCGAACCCCAAAATCCTCTCcctcataattttatatgggaaatgaaaaaattttccCCAGATTTTCATGCTCCAATCATACAAAATCAAAACCCAGgattaaaagaagaaggaaaaggaagcaAACAGGGGGATAagaaaacagaacaaaatgaagaagacAGAGCTAGATGCGAATGGAACTTCACCCTCTCCGCCGTAGTTTCTTCAAGCTCCACCGGAACAACTACCGACACGCTTGGAGTCATAGAATTTGACCCTTCTGATAGGTTCATCGCCACAGGTGGGATAGCCAGAAAAATAAGattgtataatttaagttGCGTGCTGCCAAACACGGCCTTCCATGGTGAGGTACGTTTATTAGACCATGCTAGTGCATGTGATTACTATATATGCACGCCGGCGAAGCTCAGCAGCCTCCGGTGGAAACCCGGCTCAAATGGGCGGGTCTTGGGCTCCGGCGACTACGACGGGGTGGTCATGGAATATGACGTTGAGAGGAAAATACCCGTTTTTGAGCGTGACGAGCACGGGGGGCGTCGGGTATGGAGCGTGGATTACTCGCATTTGGACCCGGTTGTGGGTGCATCCGGGTCGGATGACGGGACCGTGCAAATGTGGGACCCACGCTGCGACGGCGGAGAGAACATCGCCACTGTGAGACCCAGCCGTACATCTAGCCCGGTTTGCTGTGTCGAATTTAACCCGTACGGTGACACATTGGTGGCCGTTGGATGTGCGGATCGGAAGGCGTACGGGTACGATATCCGGAGAATGTCGGATCCCGTTCTACAGTTCGACGGGCATAGAAAAACCGTTACCTACGTCCGATTCCTCGATGCACACACAATGGTAACTTCTGCCACCGATGGTTGTCTAAAGCTATGGAATGTAAACGATTCGCGTTTGATTCGGGCTTACACGGGGCACGTGAATGATCGGCACTTTGTCGGGTTGTCCGTTTGGAGAAATGGCGGGTTACTCGGATGCGGCTCGGAAAACAACAAGGTATTTGTGTACGATAAAAGATGGGGTGATCCCATATGGGTCCATGGATTTGATTCGTTGGGAGAACATGGATTCGTGAGCAGTGTGGGTTGGAGGCAATCGGGTGAGGAGCAGTGTACCCTAGTGGCAGGAGGTTCAGATGGGGTACTGCAGGTATTTGTGGGAACCAAGAGTTCAGTTTCACTGTA 1217 0.4815 MGAFRWSEPQNPLPHNFIWEMKKFSPDFHAPIIQNQNPGLKEEGKGSKQGDKKTEQNEEDRARCEWNFTLSAVVSSSSTGTTTDTLGVIEFDPSDRFIATGGIARKIRLYNLSCVLPNTAFHGEVRLLDHASACDYYICTPAKLSSLRWKPGSNGRVLGSGDYDGVVMEYDVERKIPVFERDEHGGRRVWSVDYSHLDPVVGASGSDDGTVQMWDPRCDGGENIATVRPSRTSSPVCCVEFNPYGDTLVAVGCADRKAYGYDIRRMSDPVLQFDGHRKTVTYVRFLDAHTMVTSATDGCLKLWNVNDSRLIRAYTGHVNDRHFVGLSVWRNGGLLGCGSENNKVFVYDKRWGDPIWVHGFDSLGEHGFVSSVGWRQSGEEQCTLVAGGSDGVLQVFVGTKSSVSL 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01419 405 MobiDBLite consensus disorder prediction 44 61 - -
Bva03g01419 405 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 273 309 - -
Bva03g01419 405 ProSitePatterns Trp-Asp (WD) repeats signature. 291 305 IPR019775 -
Bva03g01419 405 PANTHER WD REPEAT-CONTAINING PROTEIN RUP1 37 401 IPR044616 -
Bva03g01419 405 Gene3D - 59 398 IPR015943 GO:0005515
Bva03g01419 405 Pfam WD domain, G-beta repeat 183 215 IPR001680 GO:0005515
Bva03g01419 405 Pfam WD domain, G-beta repeat 269 304 IPR001680 GO:0005515
Bva03g01419 405 Pfam WD domain, G-beta repeat 234 257 IPR001680 GO:0005515
Bva03g01419 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 273 313 IPR001680 GO:0005515
Bva03g01419 405 MobiDBLite consensus disorder prediction 32 61 - -
Bva03g01419 405 SMART WD40_4 174 215 IPR001680 GO:0005515
Bva03g01419 405 SMART WD40_4 353 397 IPR001680 GO:0005515
Bva03g01419 405 SMART WD40_4 67 111 IPR001680 GO:0005515
Bva03g01419 405 SMART WD40_4 130 171 IPR001680 GO:0005515
Bva03g01419 405 SMART WD40_4 226 262 IPR001680 GO:0005515
Bva03g01419 405 SMART WD40_4 307 348 IPR001680 GO:0005515
Bva03g01419 405 SMART WD40_4 266 304 IPR001680 GO:0005515
Bva03g01419 405 SUPERFAMILY WD40 repeat-like 85 396 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01419 Bva-Chr3 13550951 13552168 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01419 203 364 Miscellaneous Gene Families AT5G08390 24.540 2.33e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01419 K10143 - jre:108998670 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01419 03 13550951 13552168 Bva03g01419 03 13550951 13552168 ECH