Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01411 ATGGATTCTGAAGTTGTTCATAGTCGCGTGCATGACGCGTACGGCCAAGATCATGGCTTACAACATGGTGGGGACGAACACCATCATGACAATAAGTCGGTTCTGAAGAAGGTTAAGGCCAAAGCTAAGAAAATCAAGAACACAATCACCAAACATGGGCATGGCCATGACCATGATCACGATCACGAGTACCGTTATGAAGGCCAGCATGTCCCTGATGATCATGACTTGGACGAGGAAGATGACGAGGATGAAGACCAAGAAATTCATGGAGCACCAATTTATGAGAGTGCGGCTGTTAGAAGCAAAAGACCTGGGCAAGTTGAGAATTTGGGGCATTCTAGAGTTAATGTTGGAGGGACAACGGTTATGGGACAAGAACATCATCACGAGCCTCGAGTTGTAGTTGTTTCTCCAGTTGCTGACAGTAACCTAAACAGTGGCATTGAACCAGCTGGAACATTTGTTGGCGAAGATAAGACAAGACAACCTAAGGTGAATTTGGATAGGCCAATGGGGTTAGATGAAGATCCTCAAGCGCCAGGAAGTAGAGCTGTAGCCTATGATCCTCCCCATTATCAGAGCAAAGTCACTGATCCAACTGGGGCAGGTACTAGAGAAATAGATACTATCCCGATTGAAGACTCTCTGGCGAGAATGAATGTCCATAATGAGCCAAAACCGAACACAGTGCTGCCAACTGGTTCTGGAACTCGGTACCCTTCTGCTGGAAGCCATGACCAATTCTCTCTGCAGCCCAATCCCACATCCACAAACCCCACCATGTTCCCTGAATATCCTCAAGTAACCACAAAAACATTTGGTTCTGGGACTCAGTACCCTTCTGCTGGAAGCCATGGACAATTCTCTCCGGAGACCACTCCCACACCCACAAATGCCACCATATTTCCTGAATATCCACAAGCAACCACAAGAGCATTTGACGCCAATACTAAACCCGCTAATCATTCATATTATCAGACAACAGAGAAGCCGTCAAGCCAGAGCAGCTACACTAGCAAACCTGAATATCCTCAAGCAACCACAGGAACATTTGGCACCATAACTCAACCTGGGGAACGTTCATACGGTGAGGCATTAGAGAAGCCCTCAACCGAGAGTAGCTACACAGACAAAATCTCCTCTGCAGCCTCTGCAGTTGCTGATAAGGCTACCTCTGCCAAAGATGCTGTTGCTTCTAAGCTTGGATATGGAGAGAAGGGAAACAGAGCAGAGAACGAAATGAAACATGAACATAATATGGGGGTGGAGAAATCCTCAAACCAGAGCAGTTATACGGATAAAATATCGTCAGCAACCTCTGCGATTGCTGATAAGGCTGTCTCTGCCAAAGATGTTGTTTCTTCTAAGCTTGGATATGGAGAGAAGGGTGACAGAGATGAGAGTGAAATGAAACATGAAGAGCATAATATGGGGGCGGAGAAACCATCAACCCAGACCAGCTAcactaacaaaatttcttCGGCAACCTCTGCAATTGCTGATAAGGCTATCTTTGCCAAAGCTGTTGTTGCTTCTAAGCTTGGATATGGAGAGAAGGGTCACAGAGAcaagaatgaaatgaaacatGAAGAGCATAAGATGGGGGCGGAGAAACCATCAGATCAGAGCAGTTACACAGAGAAAATATCATCGGCAACTTCTGCAATTGCTGATAAGGCTATCTCTGCCAAGAATGTTGTTGCTTCTAAGCTTGGATATGGAGAGGAGGGTCACAGAGCTGAGAACGAAATGAAATATGAAGAGCATAAGATGGAAGCGGACAAACCATCAAACCAGAGCAGTTGCACGGAGAAAATGTTGTCAGCACCTTCTGCAATCGCTGATAAAGCTGTCTCTGCTACGAATGTTATGTCTTCCAAGTTGGGTTACGGCGAGAAAGGTGACAGAGACAAGAAGGAGACGACCCATGTAGAGCACGAAAGCAGGGATACTGCTACAAAGCCAGGATCGACTCTGGATTATGGGAAGAAAATTGCTTCCACCATGACAGAAAAATTATCCCCAGTTTATGGCGCTGTTGCGGGGGCAGGAAGTGCAGTAATGTCAAAATTGCCCGGAACTGGAACTGGAACTAATGCCAGTACAGGTAGCAGGAATGAAACAGAGAACGTGGTTCCAAAGCAGGACAAAGGGGTATCCATGAAAGACTATTTGGCTGAGAAGTTGAGGCCTGGCGATGAAGACAGGGCTCTTTCTGAGGTAATTTCAGAAGCTTATCATATGCGAAAAGAATATCCAATGGAGGGTTCCGGCAATGTGGATAGGCCTGTGAAAGAGGTGGTTAAGGATGCTATTCACAAGCGAGAGGAAGTGCCGGAGAAATCAGAGCAGAAGCGACCACTGGGGAAGGTAACTGAGTCAGTGGAAGTGAGGAGGTACTTGGGCACTGACAAGGATGAAAAGGGGAGTGAAGAGAGCCACGTAAACAGCCCCGGGAAGGGTGTGGTTGATAAGGTTAAAGTTGCGGTTGGTTCCTTGTTTGGAAAAACGGGGGACACTCCATCCTCCCAAGAAGTAAGAGATGGTGAGCAAGGCACTACagaggagaagagaaatatttcAGGAATCAACTA 2597 0.4582 MDSEVVHSRVHDAYGQDHGLQHGGDEHHHDNKSVLKKVKAKAKKIKNTITKHGHGHDHDHDHEYRYEGQHVPDDHDLDEEDDEDEDQEIHGAPIYESAAVRSKRPGQVENLGHSRVNVGGTTVMGQEHHHEPRVVVVSPVADSNLNSGIEPAGTFVGEDKTRQPKVNLDRPMGLDEDPQAPGSRAVAYDPPHYQSKVTDPTGAGTREIDTIPIEDSLARMNVHNEPKPNTVLPTGSGTRYPSAGSHDQFSLQPNPTSTNPTMFPEYPQVTTKTFGSGTQYPSAGSHGQFSPETTPTPTNATIFPEYPQATTRAFDANTKPANHSYYQTTEKPSSQSSYTSKPEYPQATTGTFGTITQPGERSYGEALEKPSTESSYTDKISSAASAVADKATSAKDAVASKLGYGEKGNRAENEMKHEHNMGVEKSSNQSSYTDKISSATSAIADKAVSAKDVVSSKLGYGEKGDRDESEMKHEEHNMGAEKPSTQTSYTNKISSATSAIADKAIFAKAVVASKLGYGEKGHRDKNEMKHEEHKMGAEKPSDQSSYTEKISSATSAIADKAISAKNVVASKLGYGEEGHRAENEMKYEEHKMEADKPSNQSSCTEKMLSAPSAIADKAVSATNVMSSKLGYGEKGDRDKKETTHVEHESRDTATKPGSTLDYGKKIASTMTEKLSPVYGAVAGAGSAVMSKLPGTGTGTNASTGSRNETENVVPKQDKGVSMKDYLAEKLRPGDEDRALSEVISEAYHMRKEYPMEGSGNVDRPVKEVVKDAIHKREEVPEKSEQKRPLGKVTESVEVRRYLGTDKDEKGSEESHVNSPGKGVVDKVKVAVGSLFGKTGDTPSSQEVRDGEQGTTEEKRNISGIN 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01411 865 Pfam CAP160 repeat 609 632 IPR012418 -
Bva03g01411 865 Pfam CAP160 repeat 493 518 IPR012418 -
Bva03g01411 865 Pfam CAP160 repeat 380 405 IPR012418 -
Bva03g01411 865 Pfam CAP160 repeat 550 575 IPR012418 -
Bva03g01411 865 Pfam CAP160 repeat 436 461 IPR012418 -
Bva03g01411 865 MobiDBLite consensus disorder prediction 91 114 - -
Bva03g01411 865 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 413 484 IPR037491 GO:0009737
Bva03g01411 865 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 582 762 IPR037491 GO:0009737
Bva03g01411 865 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 524 585 IPR037491 GO:0009737
Bva03g01411 865 MobiDBLite consensus disorder prediction 772 815 - -
Bva03g01411 865 MobiDBLite consensus disorder prediction 1 33 - -
Bva03g01411 865 MobiDBLite consensus disorder prediction 631 654 - -
Bva03g01411 865 MobiDBLite consensus disorder prediction 772 865 - -
Bva03g01411 865 MobiDBLite consensus disorder prediction 224 433 - -
Bva03g01411 865 MobiDBLite consensus disorder prediction 628 661 - -
Bva03g01411 865 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 466 531 IPR037491 GO:0009737
Bva03g01411 865 MobiDBLite consensus disorder prediction 519 539 - -
Bva03g01411 865 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 466 531 - -
Bva03g01411 865 MobiDBLite consensus disorder prediction 692 710 - -
Bva03g01411 865 MobiDBLite consensus disorder prediction 407 423 - -
Bva03g01411 865 MobiDBLite consensus disorder prediction 691 720 - -
Bva03g01411 865 MobiDBLite consensus disorder prediction 227 358 - -
Bva03g01411 865 MobiDBLite consensus disorder prediction 519 550 - -
Bva03g01411 865 MobiDBLite consensus disorder prediction 164 207 - -
Bva03g01411 865 MobiDBLite consensus disorder prediction 458 489 - -
Bva03g01411 865 MobiDBLite consensus disorder prediction 588 609 - -
Bva03g01411 865 MobiDBLite consensus disorder prediction 368 388 - -
Bva03g01411 865 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 759 849 IPR037491 GO:0009737
Bva03g01411 865 MobiDBLite consensus disorder prediction 458 480 - -
Bva03g01411 865 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 1 420 IPR037491 GO:0009737
Bva03g01411 865 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 413 484 - -
Bva03g01411 865 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 582 762 - -
Bva03g01411 865 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 524 585 - -
Bva03g01411 865 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 759 849 - -
Bva03g01411 865 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 1 420 - -
Bva03g01411 865 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01411 Bva-Chr3 13489214 13492645 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01411 - - aprc:113866664 538.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01411 03 13489214 13492645 Bva03g01411 03 13489214 13492645 ECH