Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01370 ATGTGGCCGTTTAGCAGACAAGGGCCGTCTGGgttttcatcatcttccaCTGCTGAGGAAGTTACTCGAGGGATCGATGGCACTGGTCTCACTGCGATTGTCACTGGAGCCTCAAGTGGTATTGGTACTGAGACCACACGTGTTCTTGCTTTGCGTGGTGTCCATGTGATTATGGCGGTGAGAAACTTGCTTGCTGCCAAAGAAGTCAAAGAAGCAATAGTTAAGGAGTTACCCACTGCTAAGGTTGATGCAATGGAGTTAGATCTTAGTTCAATGGTATCTGTCCGGAAGTTTGCATCAGAGTTTAATTCTTCTGGTCTTCCATTAAACATCCTGATAAACAATGCAGGAATCATGGCAACCCCTTTTACGCTCTCCAAAGATAATATCGAACTACAGTTTGCTACAAATCACATAGGTCATTTTCTCCTGACGAATCTTTTGTTggataaaatgaagaaaacagcACGTGAAAgtaagaaagaaggaagaattGTTAATGTCTCTTCAGGGGCTCACAGGATTACATATCGTGAAGGTATCCGTTTCGATAAAATCAATGATGAGTCAAGTTATAGCAGTTGGCCTGCATATGGACAATCAAAGCTTGCTAATATCTTACATGCCAATGAACTTGCAAGACGTCTCAAGGAAGATGGGGTAGATATTACTGCAAATTCTCTTCACCCGGGAGCAATTCTTACCAATCTTTTCCGTTATAACAATATCATTAATGGTATAGTCAATACGTTAGGGAAATATGTGTTGAAAAATGTCCCGCAGGGAGCGGCAACAACGTGCTATGTGGCATTGCATCCACAAGTGAAGGAAGTTAGTGGTGAGTTCTTTTCGGATAGCAATCTGTCCAAAGCTTCTTCGCAGGGAAAGGATGTTGAATTGGCAAAGAAACTGTGGGATTTCAGCATGAATTTGACGAGATA 941 0.4006 MWPFSRQGPSGFSSSSTAEEVTRGIDGTGLTAIVTGASSGIGTETTRVLALRGVHVIMAVRNLLAAKEVKEAIVKELPTAKVDAMELDLSSMVSVRKFASEFNSSGLPLNILINNAGIMATPFTLSKDNIELQFATNHIGHFLLTNLLLDKMKKTARESKKEGRIVNVSSGAHRITYREGIRFDKINDESSYSSWPAYGQSKLANILHANELARRLKEDGVDITANSLHPGAILTNLFRYNNIINGIVNTLGKYVLKNVPQGAATTCYVALHPQVKEVSGEFFSDSNLSKASSQGKDVELAKKLWDFSMNLTR 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01370 313 Pfam short chain dehydrogenase 31 176 IPR002347 -
Bva03g01370 313 PANTHER RETINOL DEHYDROGENASE 2 312 - -
Bva03g01370 313 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Bva03g01370 313 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Bva03g01370 313 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Bva03g01370 313 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Bva03g01370 313 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Bva03g01370 313 Gene3D - 25 313 - -
Bva03g01370 313 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 312 - -
Bva03g01370 313 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 289 IPR036291 -
Bva03g01370 313 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Bva03g01370 313 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Bva03g01370 313 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
Bva03g01370 313 CDD retinol-DH_like_SDR_c_like 29 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01370 Bva-Chr3 13155635 13159877 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01370 33 183 Acyl Lipid Metabolism Gene Families AT1G62610 32.099 1.05e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01370 - - jre:109004519 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01370 03 13155635 13159877 Bva03g01370 03 13155635 13159877 ECH