Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01368 ATGTCAACACGTTGGTCTGTAGTGTGGGGGAAAGAAAGCATCAATCAAAGAGAGAATATGTGGGGCTTCAGCAGAGAAGAAGGGCCATCTGGGTATTCATCAAGTTCCACTGCCGAGAAAGTTACTCAAGGCATCAATGGAAGTGACCTCACTGCAATAGTCACAGGAGCAACCAGTGGTCTTGGACTGGAGACTACACGTGTTCTTGCTTTGCGGGGTGTCCATGTGATTATGGGGGTAAGAAATATGGTTGCTGCTAAAGATGTCAAAGAAGCTATCATGAAAGAGATACCAACTGCTAAAGTTGATCCCATGGAGTTAGATCTCAGTTCATTGGCATCTGTCAGGAAATTTGCGTCAGAATTTATTGCCTCTGGACTTCCATTGAACATATTGATTAACAATGCAGGACTGGGATCCAATTCCATGCTGTTCTCCAAAGACAATATTGAACTGCTTTTTGCCACAAATCACTTAGGTCATTTCCTTTTGACAAATCTTCTGTTGGATACTATGAAGAATACAGCAAGTCAAAgtaagaaagaaggaagaattGTAAATGTCTCCTCAGGGCTTCATAAGCGTTCATATCCTCAAGGAATCtgttttgaaaaaatcaaTGACAAATCCATTTTCAACCCTCTTTGTGTATATGCTCAATCAAAGCTTGCTAATATTTTACATGCTAATGAACTTGCAAGGCGCCTTAAGGAAGAAGGAGTGGATATTACTGCAAATTCTCTTCAACCTGGAGTGGTTGTCACAAATATTTTCCGTTATAGCACTCTACTTAATGCTCTAATCAAAGGGCTTGGAAGATTTGTGTTTAAGAATGTGCAGCAGGGTGCAGCAACAACATGTTATGTGGCATTGCACCCTCAAGTGAAGGGAATCACTGGAGAGTACTTTTCAAACTGTGATTTGGCCAAAACAAGCTCACAGGGAAGCGACATGGAGTTGGCAAGCAAACTCTGGGATTTCAGCACCAAATTGATTGAAGATAGTGACACAACAAATGGCTCTACTTCTTCGATACAATG 1040 0.4029 MSTRWSVVWGKESINQRENMWGFSREEGPSGYSSSSTAEKVTQGINGSDLTAIVTGATSGLGLETTRVLALRGVHVIMGVRNMVAAKDVKEAIMKEIPTAKVDPMELDLSSLASVRKFASEFIASGLPLNILINNAGLGSNSMLFSKDNIELLFATNHLGHFLLTNLLLDTMKNTASQSKKEGRIVNVSSGLHKRSYPQGICFEKINDKSIFNPLCVYAQSKLANILHANELARRLKEEGVDITANSLQPGVVVTNIFRYSTLLNALIKGLGRFVFKNVQQGAATTCYVALHPQVKGITGEYFSNCDLAKTSSQGSDMELASKLWDFSTKLIEDSDTTNGSTSSIQ 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01368 346 CDD retinol-DH_like_SDR_c_like 51 325 - -
Bva03g01368 346 PRINTS Glucose/ribitol dehydrogenase family signature 218 237 IPR002347 -
Bva03g01368 346 PRINTS Glucose/ribitol dehydrogenase family signature 127 138 IPR002347 -
Bva03g01368 346 PRINTS Glucose/ribitol dehydrogenase family signature 241 258 IPR002347 -
Bva03g01368 346 PRINTS Glucose/ribitol dehydrogenase family signature 177 193 IPR002347 -
Bva03g01368 346 PRINTS Glucose/ribitol dehydrogenase family signature 51 68 IPR002347 -
Bva03g01368 346 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 21 332 - -
Bva03g01368 346 PANTHER RETINOL DEHYDROGENASE 21 332 - -
Bva03g01368 346 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 183 191 IPR002347 -
Bva03g01368 346 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 218 237 IPR002347 -
Bva03g01368 346 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 138 IPR002347 -
Bva03g01368 346 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 51 310 IPR036291 -
Bva03g01368 346 Pfam short chain dehydrogenase 51 201 IPR002347 -
Bva03g01368 346 Gene3D - 45 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01368 Bva-Chr3 13149601 13153660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01368 49 203 Acyl Lipid Metabolism Gene Families AT1G62610 30.120 1.86e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01368 - - vvi:100264493 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01368 03 13149601 13153660 Bva03g01368 03 13149601 13153660 ECH