Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01354 ATGAGCTCAAAGCGGATATTTTGCGAAGTTTTTTCCAgtcgtggtggtggtggaggttTCAGGGGTcgaggtggtggtggtggaggttTCGGGGGTcgaggtggtggtggtggaggttTCGGCGGTcgaggtggtggtggtggaggttTCGGGGGTCGAGGTGGAGGGAGAGGAGGAGACAGAGGCGGTAGTGCTATGAAACGTGATGGCGGTCGAGGAGGAGGCAGGGGAGGTCGTGGAGGAGGTAGAGGAGGAAGGGGTGGGTTTAAAGGTGGGAGCAAGGTTGTGGTTGAGCCTCACAGGCATGAGGGGATATTCATTGCTAAGGGTAAGGAAGATGCTCTTGTGACTAAGAATCTGGTTCCCGGGGAAGCTGTTTACAATGAGAAGAGGATCTCTGTGCAGAACGAGGACGGTTCTAAAGTTGAGTACAGGGTTTGGAACCCTTTTCGTTCAAAGTTAGCTGCTGCCATTCTCGGTGGGGTTGACAACATCTACATTAAACCTGGTGCCAAAGTCCTTTACCTAGGAGCTGCTTCTGGTACCACTGTCTCTCATGTGTCTGACATTGTTGGCGCTACCGGGGTGGTATATGCAGTAGAGTTCTCTCATAGAAGTGGCCGTGATTTGGTCAACATGGCAAAAAAGCGAACTAATGTTATACCCATTATTGAGGATGCTAGGCATCCTGCCAAATACAGGATGTTGGTTGGCATGGTAGATGTGATATTTTCTGATGTTGCTCAGCCTGATCAGGCAAGGATTCTAGCGCTGAATGCTGCTTATTATCTGAAAACAGGAGGTCATTTTGTTATTTCCATAAAGGCTAATTGCATAGATTCCACAGTCCCAGCAAGTGCTGTTTTTGTCAGTGAAGTTAACAAGCTACGTGCAGATCAATTTAAGCCTGCTGAGCAAGTCACCCTTGAACCATTTGAGCGTGACCATGCTTGTGTTGTTGGTGGTTACAGATTgcccaagaagaagaaagatgctGAATA 1001 0.4266 MSSKRIFCEVFSSRGGGGGFRGRGGGGGGFGGRGGGGGGFGGRGGGGGGFGGRGGGRGGDRGGSAMKRDGGRGGGRGGRGGGRGGRGGFKGGSKVVVEPHRHEGIFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGSKVEYRVWNPFRSKLAAAILGGVDNIYIKPGAKVLYLGAASGTTVSHVSDIVGATGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNAAYYLKTGGHFVISIKANCIDSTVPASAVFVSEVNKLRADQFKPAEQVTLEPFERDHACVVGGYRLPKKKKDAE 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01354 333 Gene3D Phosphorylase Kinase; domain 1 92 147 - -
Bva03g01354 333 PRINTS Fibrillarin signature 250 279 IPR000692 GO:0003723|GO:0006364|GO:0008168
Bva03g01354 333 PRINTS Fibrillarin signature 195 212 IPR000692 GO:0003723|GO:0006364|GO:0008168
Bva03g01354 333 PRINTS Fibrillarin signature 170 191 IPR000692 GO:0003723|GO:0006364|GO:0008168
Bva03g01354 333 PRINTS Fibrillarin signature 302 323 IPR000692 GO:0003723|GO:0006364|GO:0008168
Bva03g01354 333 PRINTS Fibrillarin signature 143 162 IPR000692 GO:0003723|GO:0006364|GO:0008168
Bva03g01354 333 PRINTS Fibrillarin signature 115 134 IPR000692 GO:0003723|GO:0006364|GO:0008168
Bva03g01354 333 PRINTS Fibrillarin signature 220 249 IPR000692 GO:0003723|GO:0006364|GO:0008168
Bva03g01354 333 MobiDBLite consensus disorder prediction 11 94 - -
Bva03g01354 333 Pfam Fibrillarin 97 324 IPR000692 GO:0003723|GO:0006364|GO:0008168
Bva03g01354 333 Hamap Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase [flpA]. 111 324 IPR000692 GO:0003723|GO:0006364|GO:0008168
Bva03g01354 333 SMART Fibrillarin_2 97 325 IPR000692 GO:0003723|GO:0006364|GO:0008168
Bva03g01354 333 PANTHER RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN 23 332 - -
Bva03g01354 333 Gene3D Vaccinia Virus protein VP39 148 325 IPR029063 -
Bva03g01354 333 PANTHER BNAA03G47570D PROTEIN 23 332 - -
Bva03g01354 333 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 97 324 IPR029063 -
Bva03g01354 333 ProSitePatterns Fibrillarin signature. 195 209 IPR020813 GO:0003723|GO:0006364|GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01354 Bva-Chr3 13067495 13070551 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01354 K14563 - gmx:100814656 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01354 03 13067495 13070551 Bva03g01354 03 13067495 13070551 ECH