Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01351 ATGGACACGAACGTTCCTCTGCTTAGCGGTGCAGAGGCGGCGCTTCTGGCGGAGGACGGTGACTATGCCCCCATGAAAGATTTCAAGGCGGCGAAGAGAGTATTTCTTATGGAAACCAGGAGAATGTGGGAGATTGCAGCACCAATCATTTTCAACATTCTGTGCCAATTCGGCGTCAATTCCGTCACCAGCATCTTCGTTGGTCATCTCGGTGACGTTGAGCTCTCTGCTGTCTCTTTGTCTCTATCTGTTATTGGcaccttttcttttggcttcATGCTTGGCATGGGAAGTGCACTGGAGACACTGTGTGGTCAAGCTTTTGGTGCTGGCCAGGTTCATTTGCTCGGTGTTTACACGCAACGGTCATGGATAATTCTATGGATGACCTGCATTTGCCTATTGCCAATTTACATATTTGCTGCTCCAATTTTGAAACTTCTTGGCCAGCAAAGTGACATAGCTGATCTTGCTGGGAATTTCACTCTTCTAGTAATTCCTCAGTTTTTTTCCCTTGCCTTCATTTTTCCAACCCAAAAGTTCCTTCAAGCTCAAAGCAAAGTTAACGTGATTGCGTGGATTGGGTTTGTGGCTCTAATTCTACACATTGGGTTGCTTTGGCTCTTGATTTATGTATTCGGGTGGGGCTTAACTGGTGCAGCAGTGGCATTTAATGTCACAAGTTGGGAGATTGCAGTGGCTCAAGTTATCTATGTTATAGGTTGGTGCAAGGAAGGATGGCATGGGCTTTCATGGTTGGCTTTCAAGGATATATGGGCATTTGTCAGGCTCTCCATTGCTTCTGCTGTAATGCTTTGCCTTGAGGTTTGGTATATGATGAGCCTCATAGTTCTTACTGGTCACCTTGATAATGCAGTCATTGCTGTAGATTCCTTGTCTATTTGCATGAATTACAATGGCTGGGAAGGCATGATATTCATTGGAATAAATGCAGCAATCAGcGTTAGAGTTTCCAATGAACTTGGACTGGGACATCCAAGAGCTGCCAAATACTCTGTCTATGTCACGGTCTTGCAGTCTCTTTTGATCGGATTATTTTTCATGGTTGTTGTTTTGGTGATGAGAGATTATTTCGCCATCCTTTTCACAAGCAGTGAATCTTTGCAACACGCTGTTGCACGCTTAGCATACCTCCTAGCCATCACGGTTGTTCTTAACAGTGTTCAACCAGTGATTTCTGGTGTTGCTGTCGGAGGTGGATGGCAGGCATTGGTGGCTTACATCAATGTGGGTTCTTATTACATTTTTGGGCTTCCATTAGGATTCTACCTTGGTTATGCAGCAAACTTGGGGGTTAAGGGACTTTGGGGAGGTATGATATGTGGAACTGCATTGCAAACCTTACTGCTCTTGTTTGTACTTTACAAAACCAATTGGAACAAAGAGGTGGAACAAACAAGTGAACGCATGCGGAAATTGGGTGGTCAAGACATCAAAGTAGATAAGACAGAGGCTTGTACATA 1484 0.4387 MDTNVPLLSGAEAALLAEDGDYAPMKDFKAAKRVFLMETRRMWEIAAPIIFNILCQFGVNSVTSIFVGHLGDVELSAVSLSLSVIGTFSFGFMLGMGSALETLCGQAFGAGQVHLLGVYTQRSWIILWMTCICLLPIYIFAAPILKLLGQQSDIADLAGNFTLLVIPQFFSLAFIFPTQKFLQAQSKVNVIAWIGFVALILHIGLLWLLIYVFGWGLTGAAVAFNVTSWEIAVAQVIYVIGWCKEGWHGLSWLAFKDIWAFVRLSIASAVMLCLEVWYMMSLIVLTGHLDNAVIAVDSLSICMNYNGWEGMIFIGINAAISVRVSNELGLGHPRAAKYSVYVTVLQSLLIGLFFMVVVLVMRDYFAILFTSSESLQHAVARLAYLLAITVVLNSVQPVISGVAVGGGWQALVAYINVGSYYIFGLPLGFYLGYAANLGVKGLWGGMICGTALQTLLLLFVLYKTNWNKEVEQTSERMRKLGGQDIKVDKTEACT 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01351 494 Pfam MatE 48 207 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bva03g01351 494 Pfam MatE 268 429 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bva03g01351 494 CDD MATE_eukaryotic 38 472 IPR045069 GO:0042910|GO:1990961
Bva03g01351 494 PANTHER MULTIDRUG RESISTANCE PROTEIN 15 476 - -
Bva03g01351 494 PANTHER PROTEIN DETOXIFICATION 15 476 - -
Bva03g01351 494 TIGRFAM matE: MATE efflux family protein 48 443 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01351 Bva-Chr3 13044996 13049120 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01351 K03327 - jre:108982687 765.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01351 03 13044996 13049120 Bva03g01351 03 13044996 13049120 ECH