Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01346 ATGTACTTCAGCAGCACCATACGCAACATCACTATAACGTCGAAACCTCATCTCACTCTCTGTAGACTACAGCCGTTGTCTATAGAACATCTACCAACACAAATGGTGGTGTCTCTCCGATTACCTTCTCTTACCCATCTCTTGGGCTCACCCTCTAGTTCCGcaatttccaaaatttctcGCCGTGCTCCGGTGATTCTACGGCGGCGCCATCATGGGAATTATCTTCGGCCTCTACTACTTGCCGCTGCTCAAAGCACGGCGGCGCAAACTGAGGATCGAGCCGATAGCTTGAAGAAGGGAGTTCAGGACCAAGTTATCACACCTAGGTCGCAGGACTTCAATGCTTGGTATCTCGATGTTATAGCCAATGCTGAGCTCGCTGATTATGGCCCCGTCCGTGGAACAATGGTCATTCGTCCATACGGTTACGCGATATGGGAAGCGATTCAGGACTATTTGAACGTGAAGTTCAAGGAGACTGGACATAGTAACATGTATTTTCCACAGTTTATTCCGTACTCATTTATAGAGAAAGAAGCTAGCCATGTTGAGGGATTCAGCCCTGAGTTAGCACTTGTGACGATTGGAGGAGGAAAGGAGCTTGAAGAAAAGCTTGTGGTCCGACCTACAAGTGAAACCATTGTGAATCACATGTTTACCCAGTGGATTCACAGTTACCGTGATCTTCCTCTTTTGATTAACCAGTGGGCAAATGTTACAAGATGGGAAATGCGCACTAAACCATTTGTAAGGACCCTTGAATTTCTCTGGCAAGAGGGCCATACTGCTCATGCTACTCCAGAAGAGGCAGAAAATGAGGCTATACAAATGATTGACATCTATACCAGGTTTGCTTATGAGCAAGCTGCAATACCTGTCATTACAGGTCGAAAATCTAGAGTAGAAACATTTGCTGGTGCTTGTAAGACCTATACAATTGAGGCCATGATGGGTGACAAGAAAGCATTGCAAGCGGGAACCAGTCACAACCTTGGGCAAAATTTCTCCCGTGCTTTTGGGACACAGTTCACAGATGAAAATGGACAAAGACAACATATTTGGCAGACATCATGGGCAATTAGTACCCGCTTTGTTGGAGGTATCATCATGACTCATGGAGATGATGCCGGCCTGATGCTTCCCCCAAAGATTGCACCAATACAGGTGGTTATAGTACCTATTTGGAAGAAGGATAGTGAAAAAACGGCTGTTCTAAATGCTGCATCATCTGTAAGAGAAGTACTGCAGACTGCAgggattaaaattaaacttgatgaCTCAGATCAAAGGACCCCAGGATGGAAATTCAACTTCTGGGAGATGAAAGGAGTACCTCTTAGAATTGAAATCGGTCCTCGTGATGTGTCTAGTGGAAGTGTGGTGATTTCCAGAAGAGATGTTCCTGGGAAGCAAGGGAAAGTATTTGGAATTTCCATGGAACCTTCAGTTTTGGAGTCTTATGTTAAAGACAAGTTGGATGAGATTCAGTCTTCTCTTTTGGATAGGGCAATTTCATTTCGGGACAGTAATATTGTAGATGTGAACTCATACGATGAACTTAAATCCGTTATATcacaaggcaaatgggcaagaGGCCCTTGGTCAGCTAgTGATGAAGATGAGACTAAAGTGAAAGAAGAAACGGGGGCAACCATCAGGTGTTTCCCTTTTGAGCAGCCAGAAGGGGTTAAAAAATGCTTAATGACCGGAAATCCTGCTGAAGAAGTTGCTATTTTTGCCAAATCTTACTA 1754 0.431 MYFSSTIRNITITSKPHLTLCRLQPLSIEHLPTQMVVSLRLPSLTHLLGSPSSSAISKISRRAPVILRRRHHGNYLRPLLLAAAQSTAAQTEDRADSLKKGVQDQVITPRSQDFNAWYLDVIANAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLINQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAENEAIQMIDIYTRFAYEQAAIPVITGRKSRVETFAGACKTYTIEAMMGDKKALQAGTSHNLGQNFSRAFGTQFTDENGQRQHIWQTSWAISTRFVGGIIMTHGDDAGLMLPPKIAPIQVVIVPIWKKDSEKTAVLNAASSVREVLQTAGIKIKLDDSDQRTPGWKFNFWEMKGVPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSVLESYVKDKLDEIQSSLLDRAISFRDSNIVDVNSYDELKSVISQGKWARGPWSASDEDETKVKEETGATIRCFPFEQPEGVKKCLMTGNPAEEVAIFAKSY 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01346 584 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 201 370 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bva03g01346 584 PANTHER PROLYL-TRNA SYNTHETASE 36 584 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Bva03g01346 584 TIGRFAM proS_fam_I: proline--tRNA ligase 108 584 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Bva03g01346 584 CDD ProRS_anticodon_zinc 378 584 - -
Bva03g01346 584 Pfam Prolyl-tRNA synthetase, C-terminal 518 584 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Bva03g01346 584 PANTHER BNAC09G28510D PROTEIN 36 584 - -
Bva03g01346 584 SMART ProRS_C_1_2 518 584 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Bva03g01346 584 SUPERFAMILY C-terminal domain of ProRS 512 584 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Bva03g01346 584 Pfam Anticodon binding domain 389 472 IPR004154 -
Bva03g01346 584 Hamap Proline--tRNA ligase [proS]. 107 584 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Bva03g01346 584 PRINTS Prolyl-tRNA synthetase signature 206 217 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Bva03g01346 584 PRINTS Prolyl-tRNA synthetase signature 245 256 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Bva03g01346 584 PRINTS Prolyl-tRNA synthetase signature 165 183 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Bva03g01346 584 PRINTS Prolyl-tRNA synthetase signature 236 244 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Bva03g01346 584 Gene3D - 513 584 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Bva03g01346 584 CDD ProRS_core_arch_euk 113 372 IPR033721 -
Bva03g01346 584 Gene3D Bira Bifunctional Protein; Domain 2 108 382 IPR045864 -
Bva03g01346 584 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 134 382 IPR006195 -
Bva03g01346 584 SUPERFAMILY Class II aaRS and biotin synthetases 113 376 IPR045864 -
Bva03g01346 584 SUPERFAMILY Class II aaRS ABD-related 378 510 - -
Bva03g01346 584 Gene3D - 383 506 IPR036621 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01346 Bva-Chr3 13006276 13011312 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01346 K01881 - gmx:100788013 973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01346 03 13006276 13011312 Bva03g01346 03 13006276 13011312 ECH