Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01324 ATGAAGCCCCATAATTCCTACGTGACTGTGATAATCTCCAGCGTTCTTATATTGGGATGGCTGGAAATGAGAGTAGCAGAGTGTAGAGTTGCTAGTTATGCTGACAAATTTGATTACCCTGCCATCAATTGCAGAAAGCACAGTGCAGTTTTGACAGATTTTGGTGGGGTTGGTGATGGCAAAACATCGAACACCAAGGTCTTTGAAGCTGCAATCAGTAATCTAAGCCACTATGCATCTGATGGGGGAGCCCAGCTTGTTGTGCCACCAGGGAAATGGTTGACTGGCAGCTTCAATCTCACAAGCCATTTTACTCTTTTCCTTCACAAAGATGCTGTCATTCTTGCATCTCAGGATGAATCAGAATGGCCTTCTCTTCCTGTGCTGCCTTCTTATGGCAAAGGAAGAGATGCTCCTGATGGAAGATTTAGCAGTCTCATTTTTGGAACTAACCTCACTGATGTTGTCATTACTGGTTACAACGGGACCATTGATGGGCAAGGAGCTTATTGGTGGCAAAAGTTTCACAAGGGTGAATTGAAACTTACCAGACCATACATGATTGAGGTCATGTATTCTGATCAGATTCAGATATCAAATCTCACTTTGGTCAACTCCCCATCATGGTTTGTCCATCCAATTTACAGCAGTAACATAATAATTCAAGGACTGACAATACTCGCACCAGTTGATTCTCCTAACACAGATGGGATAGACCCAGATTCATGCACAAACACTAGAATTGAAGACTGCTACATAGTCTCTGGTGATGACTGTATTGCAGTTAAGAGTGGTTGGGATGAATATGGAATCAAATTTGGAATGCCAACCCAACGACTCATCATCAGAAGGCTGACCTGTATATCACCGGATAGCGCGATGATCGCCTTAGGCAGTGAAATGTCCGGTGGAATCCAAGATGTTAGAGCTGAAGACAACATAGCCATCAATACTCAATCAGCTGTTAGAATCAAAACAGCAGCAGGCAGAGGAGCTTATGTGAAAGACATATTTGTGAGAGGAATGAGCTTGGACACCATGAAATATGTGTTTTGGATGACGGGAGATTACGGTTCACATCCAGACCCTGGCTTTGATCCAAAAGCACTTCCCAATATCACTGGAATAAATTATAGAGATGTGAGAGCAGACAATGTGACTTACTCAGCAAAACTTGGTGGAATTTCTGGGGACCCTTTTACAGGAATCTGCATTTCTAATGTTACTATAGGACTGACTGAAAAGCCAAAGGATCTTCAGTGGAATTGCACTGATGTTGAGGGAGTTACAAGCAATGTGACTCCTAAAGCTTGTGATTTGCTGCCTGAGAAGGAACAGAAATTTGACTGTCCTTTCCCAGATGACAAGCTGCCCATTGAGAGTGTTCAGATGAAGACTTGTTCTTTGACCACCGTTTCTTTCTTCTG 1427 0.4296 MKPHNSYVTVIISSVLILGWLEMRVAECRVASYADKFDYPAINCRKHSAVLTDFGGVGDGKTSNTKVFEAAISNLSHYASDGGAQLVVPPGKWLTGSFNLTSHFTLFLHKDAVILASQDESEWPSLPVLPSYGKGRDAPDGRFSSLIFGTNLTDVVITGYNGTIDGQGAYWWQKFHKGELKLTRPYMIEVMYSDQIQISNLTLVNSPSWFVHPIYSSNIIIQGLTILAPVDSPNTDGIDPDSCTNTRIEDCYIVSGDDCIAVKSGWDEYGIKFGMPTQRLIIRRLTCISPDSAMIALGSEMSGGIQDVRAEDNIAINTQSAVRIKTAAGRGAYVKDIFVRGMSLDTMKYVFWMTGDYGSHPDPGFDPKALPNITGINYRDVRADNVTYSAKLGGISGDPFTGICISNVTIGLTEKPKDLQWNCTDVEGVTSNVTPKACDLLPEKEQKFDCPFPDDKLPIESVQMKTCSLTTVSFF 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01324 475 SUPERFAMILY Pectin lyase-like 44 473 IPR011050 -
Bva03g01324 475 SMART pbh1 216 242 IPR006626 -
Bva03g01324 475 SMART pbh1 243 264 IPR006626 -
Bva03g01324 475 SMART pbh1 305 326 IPR006626 -
Bva03g01324 475 SMART pbh1 373 407 IPR006626 -
Bva03g01324 475 Pfam Glycosyl hydrolases family 28 144 427 IPR000743 GO:0004650|GO:0005975
Bva03g01324 475 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 12 468 - -
Bva03g01324 475 Gene3D - 28 438 IPR012334 -
Bva03g01324 475 PANTHER PECTIN LYASE-RELATED 12 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01324 Bva-Chr3 12846736 12849322 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01324 32 469 Glycoside Hydrolase AT3G48950 71.267 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01324 - - gmx:100779166 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01324 03 12846736 12849322 Bva03g01324 03 12846736 12849322 ECH