Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01302 ATGCTATGTAAAACAGCTGCAAAGATTTTTACCCGAAATGAACTATGCCACTTGGAAGATATGTGCCTGCGGGTTCTTTCTTTGTGCAATTCACAGTCGCTGAAGGAGGGAATCTGCGTTCACAGCCCAATAATCAAACTGGATCTTCAAgataacatatatttaaacaaCAATATGTTGTCTTTGTATGCTAAATGCATTGGAGTTGGACAAGCACGCCACTTCTTTGATGAAATGCCCCATAAAGATGTTGTGTCCTGGACTGCTGTTCTGTCTGCTCATGTCAGGAATAGACATCATTGTGAGGCACTTGAATTGTTCAATTCGATGCTACATTCGGGTCAATACCCAAATGAGTTCACCTTATCTAGTGCCTTGAGATCGTGTTCTGCACTGGGAGACTTTGATAATGGGGCTAAAATTCATGCCCATGTGGTCAAGCTAGGGTTGGAAGGAAACAATGTTCTTGGTACcaatttgattgatttatatACCAATTGTGATTATGCTGAGGAAGCATACATGGTGCTTACATTTATGAAAGATGGTGATATTGTTTCTTGGACAACATTGATTTCTTCATTAGTTGAAAGTCAAAAATGGAGTGATGCCTTCCAACTTTATGTCAAAATGATTGAAGCAGAAGTTCATCCTAATGAGTTCACTTTTGTTAAACTCTTAGGCGcttcttgttttcttggtTTGAATTATGGGAAAAAACTTCATGCGCATTTGATCAGATTTTGCATTGAAATGAATGTGGTTTTGAAAACTGCTATTGTTGATATGTATTCAAAATGTCAACGGATGGGTGATGCTATTAAGGTTTCAAATCAAACCCCAGAATATGATGTGTTCTTATGGACTACCATTATCTCTGGTTtcactcaaaattttcaagtcaaaGAGGCTGTCAACACATTTGTTGAGATGGAAATATCTGAAATTCTCCCAAATAATTTTACCTATACTAGCTTACTAAATGCAAGCAcatcaattttatcattgGAGCTAGGAGAACAATTTCATTCACGTTTAGTCAAGGTTGGGTTAGAAGATGATCTTTATGCTGGAAATTCACTGGTTGATATGTACATGAAATGCTCCCACAGTACAACAGATGCTATTAAAGTTTTTCGGGGAATGACCTCTCCAAATGTCGTCTCTTGGACTTCCTTGATTGCTGGTTTTGCAGAACATGGCTTTGAAGAAGATTCATTTCAGTTGTATATAGAGATGCAAGCTGCAGGAGTTCAACCAAATTCCTTTACACTTTCTAGCGTCCTTGGGGCTTGCAGCAGAATAAAGTCTCTTGGTCAAACAATGAAGCTCCatgcatatattataaaaacaaaagcagaCAATCACATAGCTGTTGGGAATGCTCTTGTAGATGCCTATGCTGGATGTGAAATGCTAAATGATGCGTGGTGTGTTATTGACATGATGAGTCATAGAGATCCTGTCACATACACAAGCTTAGCTGCAAGAATGAACCAGATGGGAAATCATGAACTGGCATTAGAAATCATCACTCACATGTACAACGATGGCATTGTGATGGATGAATTTAGCCTGGCAAGTTTTTTATCAGCTGCAGCTGGTTTAGTCTCGTTGGAAACCGGAAAGCAGCTACATTGTCATTCTATCAAATCAGGTCTAGAGAGCTTTATCAAAGTTTCAAATGGCTTAGTTCATACGTACAGCAAGTGTGGTTGTGTACATGATGCATATAGAgctctcaaaaaaataaataggcCAGATGCTGTGTCATGGAATGGATTGATATCTGGATTGGCATATACTGGGCATTTTTCCCATGCTCTTTCTGCCTTTGATGATATGAGGTTAGCAGGAGTTCAACCTGATTCTGTTACATTCTTGACACTGCTTTTTGCTTGCAGCCATGGAAATTTGTTTGATCTGGGTCTTGAGTACTTCCATTGTATGGAAAGAATGTACAATATAACGCCAAAATTGGATCACTATGTGTCTTTAGTTGATCTCCTCGGCAGAGCCGGTCGCCTAGAGGAAGCCATGGAAGTTATTGAAACATTGCCTTCTAGGCCAAACTCACtgatatataaaacattattaagTGCCTGCAAGTTACATGGAAATGTACCTCTGGGAGAAGATATGGCCAGGAGAGCTCTCGAGCTTGACCCATTGGATCCTGCAACATACTTGCTACTTGCAAACTTGTATGACAATGCCAGAATGTATGATTTAAGCGAAAAGACTCGCAGGCTCGTGAGACAAAGAGGTTTAAGAAAAGTCCAGGGCTTTGGAGATAAGAAGCAAGATATGTGCTTCTCTACAAGGGAGAGAAGATA 2336 0.3759 MLCKTAAKIFTRNELCHLEDMCLRVLSLCNSQSLKEGICVHSPIIKLDLQDNIYLNNNMLSLYAKCIGVGQARHFFDEMPHKDVVSWTAVLSAHVRNRHHCEALELFNSMLHSGQYPNEFTLSSALRSCSALGDFDNGAKIHAHVVKLGLEGNNVLGTNLIDLYTNCDYAEEAYMVLTFMKDGDIVSWTTLISSLVESQKWSDAFQLYVKMIEAEVHPNEFTFVKLLGASCFLGLNYGKKLHAHLIRFCIEMNVVLKTAIVDMYSKCQRMGDAIKVSNQTPEYDVFLWTTIISGFTQNFQVKEAVNTFVEMEISEILPNNFTYTSLLNASTSILSLELGEQFHSRLVKVGLEDDLYAGNSLVDMYMKCSHSTTDAIKVFRGMTSPNVVSWTSLIAGFAEHGFEEDSFQLYIEMQAAGVQPNSFTLSSVLGACSRIKSLGQTMKLHAYIIKTKADNHIAVGNALVDAYAGCEMLNDAWCVIDMMSHRDPVTYTSLAARMNQMGNHELALEIITHMYNDGIVMDEFSLASFLSAAAGLVSLETGKQLHCHSIKSGLESFIKVSNGLVHTYSKCGCVHDAYRALKKINRPDAVSWNGLISGLAYTGHFSHALSAFDDMRLAGVQPDSVTFLTLLFACSHGNLFDLGLEYFHCMERMYNITPKLDHYVSLVDLLGRAGRLEEAMEVIETLPSRPNSLIYKTLLSACKLHGNVPLGEDMARRALELDPLDPATYLLLANLYDNARMYDLSEKTRRLVRQRGLRKVQGFGDKKQDMCFSTRERR 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01302 778 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 301 762 - -
Bva03g01302 778 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Bva03g01302 778 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Bva03g01302 778 Gene3D Tetratricopeptide repeat domain 533 775 IPR011990 GO:0005515
Bva03g01302 778 Gene3D Tetratricopeptide repeat domain 4 147 IPR011990 GO:0005515
Bva03g01302 778 Gene3D Tetratricopeptide repeat domain 333 456 IPR011990 GO:0005515
Bva03g01302 778 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 301 762 - -
Bva03g01302 778 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 102 433 - -
Bva03g01302 778 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 588 622 IPR002885 -
Bva03g01302 778 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 102 433 - -
Bva03g01302 778 Gene3D Tetratricopeptide repeat domain 239 332 IPR011990 GO:0005515
Bva03g01302 778 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 25 319 - -
Bva03g01302 778 Gene3D Tetratricopeptide repeat domain 153 238 IPR011990 GO:0005515
Bva03g01302 778 Pfam PPR repeat family 184 231 IPR002885 -
Bva03g01302 778 Pfam PPR repeat family 284 329 IPR002885 -
Bva03g01302 778 Pfam PPR repeat family 587 634 IPR002885 -
Bva03g01302 778 Pfam PPR repeat family 82 129 IPR002885 -
Bva03g01302 778 Pfam PPR repeat family 385 433 IPR002885 -
Bva03g01302 778 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Bva03g01302 778 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 25 319 - -
Bva03g01302 778 Pfam PPR repeat 662 684 IPR002885 -
Bva03g01302 778 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 487 521 IPR002885 -
Bva03g01302 778 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 83 117 IPR002885 -
Bva03g01302 778 SUPERFAMILY TPR-like 577 744 IPR011990 GO:0005515
Bva03g01302 778 TIGRFAM PPR: pentatricopeptide repeat domain 287 319 IPR002885 -
Bva03g01302 778 TIGRFAM PPR: pentatricopeptide repeat domain 388 421 IPR002885 -
Bva03g01302 778 TIGRFAM PPR: pentatricopeptide repeat domain 85 119 IPR002885 -
Bva03g01302 778 TIGRFAM PPR: pentatricopeptide repeat domain 590 624 IPR002885 -
Bva03g01302 778 TIGRFAM PPR: pentatricopeptide repeat domain 186 220 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01302 Bva-Chr3 12681784 12684455 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01302 103 766 Glycoside Hydrolase AT3G49170 31.672 7.67e-109 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01302 - - gmx:100791770 1092.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01302 03 12681784 12684455 Bva03g01302 03 12681784 12684455 ECH