Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00742 aTGGGTGATGCATTTGATGAAGACTGTGATTATCTCTTTAAAGCAGTCCTGATTGGGGACTCTGGAGTTGGGAAATCAAATCTGCTGTCAAGGTTCTCAAAAGATGAATTCCGTTTGGATTCAAAACCCACCATAGGAGTGGAATTCGCTTACCGGAATATCAAAGTTGCTGATAAACTCATCAAAGCTCAGATATGGGACACTGCCGGCCAAGAAAGGTTCAGGGCCATAACAAGCTCATACTACAGAGGAGCCTTGGGGGCATTGCTAGTATATGACATAACAAGAAGAGCAACCTACGAAAGCGTAAGAAAATGGTTGCGGGAGCTGAGAGAATTCGGTAACGAAGACATGGTGGTTGTTTTAGTTGGAAACAAATCTGATTTGGGTCAATCAAGAGAAGttgagaaggaagaaggaaaaggtTTTGCAGAAAACGAAAGgttatttttcatggaaaCTTCTGCTCTGCAGAATCTGAACGTTGAAGAAGCATTCATGCAAATGATCACTAAGATCCATGACATAACAAGCCAGAAAAGCTTGGAATCCAAGGTGAACGAAACGACAAGAAATATTCCCAATGGGAAGGAGATCAATCTAGTCGATGAAGTAACTGCAACTAAACAATCCAGTTGCTGCTTGAGATG 650 0.3969 MGDAFDEDCDYLFKAVLIGDSGVGKSNLLSRFSKDEFRLDSKPTIGVEFAYRNIKVADKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATYESVRKWLRELREFGNEDMVVVLVGNKSDLGQSREVEKEEGKGFAENERLFFMETSALQNLNVEEAFMQMITKIHDITSQKSLESKVNETTRNIPNGKEINLVDEVTATKQSSCCLR 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00742 216 ProSiteProfiles small GTPase Ras family profile. 4 215 IPR001806 GO:0003924|GO:0005525
Bva03g00742 216 SMART rab_sub_5 13 176 - -
Bva03g00742 216 ProSiteProfiles small GTPase Rab1 family profile. 8 214 - -
Bva03g00742 216 TIGRFAM small_GTP: small GTP-binding protein domain 12 166 IPR005225 GO:0005525
Bva03g00742 216 ProSiteProfiles small GTPase Rho family profile. 6 174 - -
Bva03g00742 216 PANTHER DRAB5-RELATED 1 214 - -
Bva03g00742 216 SMART ran_sub_2 18 208 - -
Bva03g00742 216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 187 IPR027417 -
Bva03g00742 216 Gene3D - 6 214 IPR027417 -
Bva03g00742 216 CDD Rab11_like 10 174 - -
Bva03g00742 216 Pfam Ras family 14 174 IPR001806 GO:0003924|GO:0005525
Bva03g00742 216 SMART ras_sub_4 10 176 - -
Bva03g00742 216 PRINTS Transforming protein P21 ras signature 151 173 - -
Bva03g00742 216 PRINTS Transforming protein P21 ras signature 54 76 - -
Bva03g00742 216 PRINTS Transforming protein P21 ras signature 36 52 - -
Bva03g00742 216 PRINTS Transforming protein P21 ras signature 116 129 - -
Bva03g00742 216 PRINTS Transforming protein P21 ras signature 13 34 - -
Bva03g00742 216 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 1 214 - -
Bva03g00742 216 SMART rho_sub_3 15 172 IPR001806 GO:0003924|GO:0005525
Bva03g00742 216 SMART arf_sub_2 1 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00742 Bva-Chr3 4440133 4443448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00742 14 166 EF-hand Containing Proteins AT5G27540 27.879 1.44e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00742 K07976 - gmx:100815793 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00742 03 4440133 4443448 Bva03g00742 03 4440133 4443448 ECH