Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00736 ATGGTTGGTTTTAGAGTGAGACAGTTACACAGTAGCAGTTTCCGATTTGTGTATAGCAAGACACAAGCGGGAAGGGGAACCAGATGTCCAAACCCTTCTCCATCAAAGAAAGCGTCTTCCCTAAAGCCCGAAATAAGAAGCAAGTTGTCGACGGTCAAAGACCCAGACATAGTCCAATGGAACAAGGCCATTTCAACTCACATGCGCAATGGCCGTTGCGAATCTGCCCTCCATGTCTTCAACACAATGCCCCGTCGAAGCTCTGTCTCATACAACGCCATGATATCTGGGTACTTGCGGAATGGCAAGTTCAATCTTGCAAGAGACCTGTTTGAGGAAATGCCCCAGAGGGACATGTTTTCTTGGAACGTAATGCTTACTGGGTACGTCAGATATGGACAACTTGGGGAGGCCCGTAAGAATTTTGAACTAATGCCTGAAAAGGATGTTGTTTCTTGGAATGCAATGTTGTCTGGGTATGCTCAGAGTGGATTAGTTGACGAGGCGAGgaaaatttttgacaaaatgccCAACAAGAATCAGATTTCATGGAATGGATTATTGGCAGCATATGTTCAGAATGGAAGGATTAAGGAGGCTTACCAGCTGTTTGAGTCGAAATCAGACTGGGAATTGATTTCTTGGAATTGTTTGATGGGTGGATATGTAAACaggaaaatgttatttgatgCTAGGAGACTTTTTGACCAAATGCCTGTTAGAGATGAAGTTTCTTGGAATACTATGATTACAGGGTATGCCCAAAATGGAGATATGATAGAAGCTAGGAGATTGTTTGAGGAATCTCCAATACGTGATGTGTTTGCATGGACTGCAATGGTGTCTGGATATGTGCAAAATGGGATGTTAGATGAAGCAAGAAGGGTTTTTGATGAAATGCCAGAAAAGAATGAGATATCATACAATGCAATGATTGCTGGTTATGTGAAATGCAAAAGAATGGATATGGCAAGAGAGTTGTTTGAGGCAATGCCTTCTCAGAATATAACCTCGTGGAATACCATGATTACTGGTTATGCTCTGAATGCAAGTATTGCTCAAGCTAGAAATTTGTTTGACAGGATGCCTCAGCGTGATTGTGTATCTTGGGGGGCAATTATTGCTGGTTATGCACAGACGGGTCATTATGAAGAGGCCTTGCACATGTTTGTAGAGATGAAACGGTATGGGGAGAGTTTAAACAGGTCTTCCTTTAGTTGTGCTTTGGCCACATGTGCTGATATTGCTGCCTTGGAGTTAGGTAAGCAAGTTCATGGGCAGGCGGTGAAGGCAGGATTTGAGAGTGGGTGTTTTGTGGGGAATGCACTTCTTGGAATGTATTGTAAATGTGGCAGCATCGATGAAGCTTATGGTGTGTTTGAAGAATTAGAAGAGAAAGATATTGTCTCTTGGAACACAATGTTAGCCGGTTATGCTAGACATGGATTTGGCAAACAGGCTTTAATGATATTTGAAGCATTGAAGACATCGGGTGTTAAACCCGACGACATTACTATGGTGGGTGTTCTTGAAGGTATTTGTTCTTGTGGGGATTATTGGTA 1562 0.4181 MVGFRVRQLHSSSFRFVYSKTQAGRGTRCPNPSPSKKASSLKPEIRSKLSTVKDPDIVQWNKAISTHMRNGRCESALHVFNTMPRRSSVSYNAMISGYLRNGKFNLARDLFEEMPQRDMFSWNVMLTGYVRYGQLGEARKNFELMPEKDVVSWNAMLSGYAQSGLVDEARKIFDKMPNKNQISWNGLLAAYVQNGRIKEAYQLFESKSDWELISWNCLMGGYVNRKMLFDARRLFDQMPVRDEVSWNTMITGYAQNGDMIEARRLFEESPIRDVFAWTAMVSGYVQNGMLDEARRVFDEMPEKNEISYNAMIAGYVKCKRMDMARELFEAMPSQNITSWNTMITGYALNASIAQARNLFDRMPQRDCVSWGAIIAGYAQTGHYEEALHMFVEMKRYGESLNRSSFSCALATCADIAALELGKQVHGQAVKAGFESGCFVGNALLGMYCKCGSIDEAYGVFEELEEKDIVSWNTMLAGYARHGFGKQALMIFEALKTSGVKPDDITMVGVLEGICSCGDYW 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00736 520 TIGRFAM PPR: pentatricopeptide repeat domain 441 469 IPR002885 -
Bva03g00736 520 TIGRFAM PPR: pentatricopeptide repeat domain 182 205 IPR002885 -
Bva03g00736 520 TIGRFAM PPR: pentatricopeptide repeat domain 338 368 IPR002885 -
Bva03g00736 520 TIGRFAM PPR: pentatricopeptide repeat domain 244 268 IPR002885 -
Bva03g00736 520 TIGRFAM PPR: pentatricopeptide repeat domain 89 118 IPR002885 -
Bva03g00736 520 TIGRFAM PPR: pentatricopeptide repeat domain 368 401 IPR002885 -
Bva03g00736 520 TIGRFAM PPR: pentatricopeptide repeat domain 151 178 IPR002885 -
Bva03g00736 520 TIGRFAM PPR: pentatricopeptide repeat domain 213 240 IPR002885 -
Bva03g00736 520 TIGRFAM PPR: pentatricopeptide repeat domain 469 502 IPR002885 -
Bva03g00736 520 TIGRFAM PPR: pentatricopeptide repeat domain 276 303 IPR002885 -
Bva03g00736 520 TIGRFAM PPR: pentatricopeptide repeat domain 120 151 IPR002885 -
Bva03g00736 520 TIGRFAM PPR: pentatricopeptide repeat domain 306 336 IPR002885 -
Bva03g00736 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 272 IPR002885 -
Bva03g00736 520 MobiDBLite consensus disorder prediction 23 43 - -
Bva03g00736 520 Gene3D Tetratricopeptide repeat domain 147 208 IPR011990 GO:0005515
Bva03g00736 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 87 121 IPR002885 -
Bva03g00736 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Bva03g00736 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 467 501 IPR002885 -
Bva03g00736 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
Bva03g00736 520 Pfam PPR repeat 244 268 IPR002885 -
Bva03g00736 520 Pfam PPR repeat 120 149 IPR002885 -
Bva03g00736 520 Pfam PPR repeat 151 179 IPR002885 -
Bva03g00736 520 Pfam PPR repeat 60 86 IPR002885 -
Bva03g00736 520 Pfam PPR repeat 306 335 IPR002885 -
Bva03g00736 520 Pfam PPR repeat 213 239 IPR002885 -
Bva03g00736 520 Pfam PPR repeat 89 117 IPR002885 -
Bva03g00736 520 Pfam PPR repeat 182 205 IPR002885 -
Bva03g00736 520 Pfam PPR repeat 276 304 IPR002885 -
Bva03g00736 520 Gene3D Tetratricopeptide repeat domain 271 334 IPR011990 GO:0005515
Bva03g00736 520 Gene3D Tetratricopeptide repeat domain 335 417 IPR011990 GO:0005515
Bva03g00736 520 Gene3D Tetratricopeptide repeat domain 209 270 IPR011990 GO:0005515
Bva03g00736 520 Gene3D Tetratricopeptide repeat domain 418 519 IPR011990 GO:0005515
Bva03g00736 520 Gene3D Tetratricopeptide repeat domain 33 146 IPR011990 GO:0005515
Bva03g00736 520 PANTHER OS07G0578800 PROTEIN-RELATED 41 82 IPR045215 GO:0003723|GO:0009451
Bva03g00736 520 PANTHER OS07G0578800 PROTEIN-RELATED 78 167 IPR045215 GO:0003723|GO:0009451
Bva03g00736 520 PANTHER OS07G0578800 PROTEIN-RELATED 144 515 IPR045215 GO:0003723|GO:0009451
Bva03g00736 520 SUPERFAMILY TPR-like 60 206 IPR011990 GO:0005515
Bva03g00736 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 466 IPR002885 -
Bva03g00736 520 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 41 82 - -
Bva03g00736 520 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 78 167 - -
Bva03g00736 520 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 144 515 - -
Bva03g00736 520 SUPERFAMILY TPR-like 226 365 IPR011990 GO:0005515
Bva03g00736 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 365 IPR002885 -
Bva03g00736 520 Pfam PPR repeat family 466 515 IPR002885 -
Bva03g00736 520 Pfam PPR repeat family 366 412 IPR002885 -
Bva03g00736 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Bva03g00736 520 MobiDBLite consensus disorder prediction 23 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00736 Bva-Chr3 4397618 4401061 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00736 54 520 Glycoside Hydrolase AT3G49170 21.789 1.20e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00736 - - qsu:112038589 769.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00736 03 4397618 4401061 Bva03g00736 03 4397618 4401061 ECH