Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00664 ATGAGGTCTTCTTCTGAGACAATCAACATCGCTGCCAGTGCCCAGAGACTTGATGTTGATCATAGGATTTCCCTTCGCTTCTACTACAGGATCGCTGATAATATCCTCAAACAGGCTGATATCTTTCGTGTAGAGAAGAATACTATAGATTTATATGTCATGCTCCTAAGATTTTCTAGTTTGGTGTCTGAGACAATCCCATGCCACCGAGAATATAAAGCATCTCCacaaagtaaaaaagtttCTTTGAAAACGAAATTGTTAAATTCCTTGAATGAACTGGAGGAGTTGAAACCATTGGTACAACTGAAGATCAATGAACTTAACAGCAGGTCAGCATACCCAAAATATGGATGGGgaaaatttcaatcaaataacTCAGTAGAGTTTGCTCCAGTGAAAAAGCAAACATTGACTAGTGTTAGTGAAACGAAGGCACTGAGATCAACTACTGGAAATAGCATTGTTTATCAAGGATCAAGGGGTCAGCAGTTTAATCAAGCCAGGCCAGTGGAAGAGTATATCCGAAGAGTATCTCTAACTCTCCCACGCCCAAGCAATGAAACTCTCTCAAGACATTCCATTCTAGGCCCCAGTGGGCTTAAAGGGCAATGGCAGCTGCCTATAAGCGATAAAGGGGTTAGGTATCCAACCAACATAGATCTGTCTCCCATTGAAATACCAAGATTGCAGCAATCCTTGGAAGATGGGTCTCTGGACAAAAAAGATGATAGCATCTCAGAAAAACCTAGATCAGATTTGGAATCAATTCTTATCCAGAGTGAGGATCACCGGCCTAAATCAGTTCTTACCCAGAGTGAGGATTGCATGGCCCAGAATGCTGAGGAGCCTGgttctctcatttcttttgaaacAACAGAAGTCCCTGCACACCCAGATATAATTAGACAACCTTCTCCTCCCCCTGTACTTGCTGAAGTACAAGATTTGGTCCCTGCTGTATCAGATCATGTTATGGAGGCAGAATGTAAAACAGAGACTCCTTCATCAGATAGTTTTGTTCGTGGGGATGCTCCTCTTCAACTTCACATTTCAACTTCTATGATGGAGACTTTTATGAAGCTTGCCAAGTCAAATACTAACAAAAATCTAGAGACATGTGGTGTCCTTGCGGGTTCGCTTaaaaacagaaaatttcatattacaGCTCTAATCATTCCAAAACAGGAGTCAACATCAGATTCTTGCCAGACCACAAACGAAGAGGAGATATTTGAAGTGCAGGATAAACTATCTCTTTTTCCCCTTGGCTGGATACATACACATCCTACACAATCTTGTTTCATGTCATCAATTGATCTGCATACCCATTACTCATATCAGATTATGCTGCCAGAAGCTGTTGCAATAGTCATGGCACCAAGAGATAGTTCAAGAAACCATGGCATTTTTCGGTTGACGTCCCCAGGTGGCATGTCGGTGATTAGACAATGCCAGCAACGTGGCTTCCATCCACATAGTCAGCCTCCAGATGGTGGTCCCATTTACAAGCCGTGCACAGATGTTTACATGAACCcagatttaaaatttgatgtcaTTGATCTTCGATG 1571 0.4023 MRSSSETINIAASAQRLDVDHRISLRFYYRIADNILKQADIFRVEKNTIDLYVMLLRFSSLVSETIPCHREYKASPQSKKVSLKTKLLNSLNELEELKPLVQLKINELNSRSAYPKYGWGKFQSNNSVEFAPVKKQTLTSVSETKALRSTTGNSIVYQGSRGQQFNQARPVEEYIRRVSLTLPRPSNETLSRHSILGPSGLKGQWQLPISDKGVRYPTNIDLSPIEIPRLQQSLEDGSLDKKDDSISEKPRSDLESILIQSEDHRPKSVLTQSEDCMAQNAEEPGSLISFETTEVPAHPDIIRQPSPPPVLAEVQDLVPAVSDHVMEAECKTETPSSDSFVRGDAPLQLHISTSMMETFMKLAKSNTNKNLETCGVLAGSLKNRKFHITALIIPKQESTSDSCQTTNEEEIFEVQDKLSLFPLGWIHTHPTQSCFMSSIDLHTHYSYQIMLPEAVAIVMAPRDSSRNHGIFRLTSPGGMSVIRQCQQRGFHPHSQPPDGGPIYKPCTDVYMNPDLKFDVIDLR 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00664 523 Pfam USP8 dimerisation domain 9 98 IPR015063 -
Bva03g00664 523 CDD MPN_AMSH_like 348 523 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Bva03g00664 523 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 2 523 - -
Bva03g00664 523 Gene3D Cytidine Deaminase, domain 2 329 523 - -
Bva03g00664 523 SUPERFAMILY JAB1/MPN domain 348 479 - -
Bva03g00664 523 Coils Coil 91 111 - -
Bva03g00664 523 PANTHER AMSH-LIKE PROTEASE 2 523 - -
Bva03g00664 523 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 347 452 IPR000555 GO:0005515|GO:0008233|GO:0008237
Bva03g00664 523 MobiDBLite consensus disorder prediction 235 268 - -
Bva03g00664 523 MobiDBLite consensus disorder prediction 229 268 - -
Bva03g00664 523 ProSiteProfiles MPN domain profile. 349 479 IPR037518 -
Bva03g00664 523 Gene3D - 1 116 - -
Bva03g00664 523 SMART pad1_6 348 476 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00664 Bva-Chr3 3972562 3978964 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00664 K11866 - gmx:100800636 773.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00664 03 3972562 3978964 Bva03g00664 03 3972562 3978964 ECH