Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02439 ATGGATCTGATTTCGGGTCTACCGGACGATGTCGTCCGAGAATGTCTTATTCGTATTTCGTATCAGCAGTTCGCGGATGTTGCTGCGGTGTGTAAGCGGTGGAAGACGGAGATTGAATTGCCCGAGTTTCGCCTTTGGCGGAAGAGTGCAGGCCATAACCAAAAACTGGTTGTGATGGTTCAGGCAAGAGTTGACTTGGAGAAATCTGGGACTGGGTTTGTGAAGTGCCGCCCAATGGACCCTGTTTACGGTCTGACCATTTTTGAACCAGACACCGGTGCCTGGAGCGAGTTGCCGCTGGCACCGGGTCTGGGCAGCGGTTTACCCATGTTCTGTCAGCTGGCGGGTGTCGGGTACGATTTGGTGGTAATGGGCGGGTGGGACCCGAACTCGTGGAAAGCTTGCAATTCGGTGTACATCTATAACTTTATGTCGGCTAAATGGCGCCGAGGAGCTGACATGCCAGGTGGTCCCAGAACATTCTTCGCATGTGCGTCTGATTCTGATCGGATGGTGTACATCGCCGGTGGGCACGACGGGGAGAAGAACGCGTTGAGGTCGGCATTTGCTTATGATGTGGCGAGAGATGAGTGGGTCCCGCTGCCTCATATGTCATCGGAGCGTGACGAGTGCAAGGCTGTTTGCCAACATGGCAAGTTCCACGTCATCGGCGGTTATCGCTCAGAGATGCAAGGTCGGTTCGAGAGGAGCGCCGAAGCGTTCGACGTTGGCACGTGGAAGTGGAGTCAAATAGAGGAGGACTTTTTAAGAAGTGCGACGAGTCCGAGGACATGCGTCATCGGGGATGAGAAAATCTTCATGTGCGTTGACGGTGAGGTGGTGACATTACAGGACTCCACGTGGCAAGTAGTGGCGCAGGTGCCGAGCGAGATACGGAATGTAGCGTACGTGAGAACGTGGATTGGGACATTGCTATTAATTGGTTCAAGCGGGTATGGCGAGCCTCACAttggttttgttttggatATGGAATGTTGCAAGTGGAGAAAATTGGAGTACCCAGAGAGGCACAAAGGCCATGTTCAATCGGGCTGTCTTATGgagattta 1070 0.5234 MDLISGLPDDVVRECLIRISYQQFADVAAVCKRWKTEIELPEFRLWRKSAGHNQKLVVMVQARVDLEKSGTGFVKCRPMDPVYGLTIFEPDTGAWSELPLAPGLGSGLPMFCQLAGVGYDLVVMGGWDPNSWKACNSVYIYNFMSAKWRRGADMPGGPRTFFACASDSDRMVYIAGGHDGEKNALRSAFAYDVARDEWVPLPHMSSERDECKAVCQHGKFHVIGGYRSEMQGRFERSAEAFDVGTWKWSQIEEDFLRSATSPRTCVIGDEKIFMCVDGEVVTLQDSTWQVVAQVPSEIRNVAYVRTWIGTLLLIGSSGYGEPHIGFVLDMECCKWRKLEYPERHKGHVQSGCLMEI 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02439 356 ProSiteProfiles F-box domain profile. 1 49 IPR001810 GO:0005515
Bva02g02439 356 Pfam Kelch motif 115 155 IPR006652 GO:0005515
Bva02g02439 356 Pfam Kelch motif 169 205 IPR006652 GO:0005515
Bva02g02439 356 SUPERFAMILY Kelch motif 82 338 IPR015915 GO:0005515
Bva02g02439 356 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 1 356 - -
Bva02g02439 356 SUPERFAMILY F-box domain 1 48 IPR036047 GO:0005515
Bva02g02439 356 SMART kelc_smart 120 168 IPR006652 GO:0005515
Bva02g02439 356 SMART kelc_smart 171 218 IPR006652 GO:0005515
Bva02g02439 356 Gene3D - 31 348 IPR015915 GO:0005515
Bva02g02439 356 PANTHER OS02G0208700 PROTEIN 1 356 IPR044595 GO:0080037|GO:2000762
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02439 Bva-Chr2 23493836 23495097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02439 7 280 Miscellaneous Gene Families AT4G33900 22.759 1.48e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02439 - - gmx:100817910 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g02261 08 14730496 14731863 Bva02g02439 02 23493836 23495097 BWGD
Bva02g02439 02 23493836 23495097 Bva02g02439 02 23493836 23495097 ECH