LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva02g02301	ATGGATCTCAATAGTAGCATTCTGAGTTCGAACTTGACAATTGGTGAGAAGCTCTGTGCCGCGTTCATACCGCTCATAGCATTAGTAGATGCTGTAATTCTTAGCTTAGCTGATTGCTTCGAATATCATCCTCCAAAAAAGAGAATCTGTTATACATTCGAGGATCTAGTCCGTCTCTCTAAGAATTCTCCCTTTACTGTCAATGAAATTGAGGCattgtttgatttattcaataaGTTGAGCAATTCAATCATTCGTGATAATCTGATACACAAGGAAGAGCTGAGATTGACACTACTGAAAACCCCTGCTAGCGAGAATCTTTTCCTTGATAGGGTATTTGATCTCTTTgatgaaaagagaaatggCGTTATTGAATTTGAGGAGTTTGTCCATGCTCTCTCTGTCTTTCATCCTCGTGCTCCCCTTGAAGAGAAAATCGATTTTGCTTTTAGATTGTATGACTTGAGACAGACTGGATTTATTGAGCGGGAAGAAGTTAGGCAAATGGTAATTGCCATTATGTCAGAACGTGGCATAAATTTGGAAGAGGAAGTTGTTCAAGCAATTATTGATAAGACATTTGAAGATGCTGATGAAGACAAGGATGGTAAGATAGGTAAAGAAGAATGGAAGGCATTTGTTGTTCGGCACCCAAATCTCATGAGTCACATGACTCTTCCTTGTCTCACGGAGATCACCACGACATTTACCAGCTTCATTTTCAATACCGAAGTTGAAGATTCACTTTG	752	0.379	MDLNSSILSSNLTIGEKLCAAFIPLIALVDAVILSLADCFEYHPPKKRICYTFEDLVRLSKNSPFTVNEIEALFDLFNKLSNSIIRDNLIHKEELRLTLLKTPASENLFLDRVFDLFDEKRNGVIEFEEFVHALSVFHPRAPLEEKIDFAFRLYDLRQTGFIEREEVRQMVIAIMSERGINLEEEVVQAIIDKTFEDADEDKDGKIGKEEWKAFVVRHPNLMSHMTLPCLTEITTTFTSFIFNTEVEDSL	250

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva02g02301	250	ProSiteProfiles	EF-hand calcium-binding domain profile.	186	221	IPR002048	GO:0005509
	Bva02g02301	250	PANTHER	CALCINEURIN B	7	248	IPR045198	GO:0005509\|GO:0019722\|GO:0019900
	Bva02g02301	250	ProSiteProfiles	EF-hand calcium-binding domain profile.	142	177	IPR002048	GO:0005509
	Bva02g02301	250	CDD	EFh	110	171	IPR002048	GO:0005509
	Bva02g02301	250	CDD	EFh	146	215	IPR002048	GO:0005509
	Bva02g02301	250	SMART	efh_1	109	137	IPR002048	GO:0005509
	Bva02g02301	250	SMART	efh_1	190	218	IPR002048	GO:0005509
	Bva02g02301	250	SMART	efh_1	146	174	IPR002048	GO:0005509
	Bva02g02301	250	PRINTS	Recoverin family signature	160	178	-	-
	Bva02g02301	250	PRINTS	Recoverin family signature	113	134	-	-
	Bva02g02301	250	PANTHER	EF HAND CALCIUM-BINDING FAMILY PROTEIN	7	248	-	-
	Bva02g02301	250	Gene3D	-	57	249	-	-
	Bva02g02301	250	ProSiteProfiles	EF-hand calcium-binding domain profile.	105	140	IPR002048	GO:0005509
	Bva02g02301	250	ProSitePatterns	EF-hand calcium-binding domain.	199	211	IPR018247	-
	Bva02g02301	250	SUPERFAMILY	EF-hand	59	237	IPR011992	-
	Bva02g02301	250	Pfam	EF hand	110	135	IPR002048	GO:0005509
	Bva02g02301	250	Pfam	EF-hand domain pair	144	214	IPR002048	GO:0005509

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva02g02301	Bva-Chr2	22781444	22785563	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva02g02301	59	249	EF-hand Containing Proteins	AT5G55990	58.639	9.87e-83	245

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva02g02301	K06268		-	nnu:104586607	356.295