Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02083 ATGAACCAGGAAATGAATGGGGTTGAGGCACAAGAGAGGTTTCGGCAAGAGAATGAACATGAGAAAATAGATTATGTGTTCAAGGTGGTGGTGATTGGGGACTCTGCAGTGGGCAAGACACAGATACTTTCGAGGTTTGCAAAGAACGAGTTCTGCTTTGACTCAAAGTCCACCATTGGAGTTGAGTTCCAAACTAGGACTGTCACTATCAATGGCAAAGTCATCAAGGCCCAGATCTGGGATACTGCAGGCCAAGAaagGTACAGAGCAGTGACAAGTGCATACTACAGAGGAGCATTAGGGGCAATGCTGGTGTACGACATAACCAAAAGGCCGTCGTTTGATCATGTTGCAAGATGGGTTGAGGAGCTAAGAGCACACGCAGATAACTCCATTGTGATCATGTTAATTGGAAACAAAGCTGACCTCGTGGACCTAAGAGCAGTGCCCCCTGCAGATGCTGTTGAGTTTGCAGAGGATCAGGGCCTCTTCTTCTCCGAAACTTCAGCTTTCAGTGGTGAGAATGTGGAAACTGCATTTCTCAAGTTGCTTGAGGAGATTTACAAGCTAATTTCCAAGAAGGCATTGGAATGTGACAATGGCAAGGCCAATGCTGACAAGCTTACTGATGCTACTCTTAAAGGAGCAAAGATAGATATCATTTCTGCTCCTGAATTGGAAATTAGTGAGATCAAGAAATTGTCTACATGCTCTTGTTG 719 0.4478 MNQEMNGVEAQERFRQENEHEKIDYVFKVVVIGDSAVGKTQILSRFAKNEFCFDSKSTIGVEFQTRTVTINGKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRPSFDHVARWVEELRAHADNSIVIMLIGNKADLVDLRAVPPADAVEFAEDQGLFFSETSAFSGENVETAFLKLLEEIYKLISKKALECDNGKANADKLTDATLKGAKIDIISAPELEISEIKKLSTCSC 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02083 239 PANTHER - 1 239 - -
Bva02g02083 239 SMART rab_sub_5 27 190 - -
Bva02g02083 239 CDD Rab11_like 24 188 - -
Bva02g02083 239 TIGRFAM small_GTP: small GTP-binding protein domain 26 180 IPR005225 GO:0005525
Bva02g02083 239 SMART rho_sub_3 29 186 IPR001806 GO:0003924|GO:0005525
Bva02g02083 239 ProSiteProfiles small GTPase Ras family profile. 21 222 IPR001806 GO:0003924|GO:0005525
Bva02g02083 239 Pfam Ras family 28 188 IPR001806 GO:0003924|GO:0005525
Bva02g02083 239 SMART ras_sub_4 24 190 - -
Bva02g02083 239 PANTHER RAS-RELATED PROTEIN RABA3 1 239 - -
Bva02g02083 239 Gene3D - 20 222 IPR027417 -
Bva02g02083 239 ProSiteProfiles small GTPase Rab1 family profile. 22 222 - -
Bva02g02083 239 SMART ran_sub_2 32 234 - -
Bva02g02083 239 ProSiteProfiles small GTPase Rho family profile. 19 203 - -
Bva02g02083 239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 193 IPR027417 -
Bva02g02083 239 PRINTS Transforming protein P21 ras signature 50 66 - -
Bva02g02083 239 PRINTS Transforming protein P21 ras signature 165 187 - -
Bva02g02083 239 PRINTS Transforming protein P21 ras signature 130 143 - -
Bva02g02083 239 PRINTS Transforming protein P21 ras signature 68 90 - -
Bva02g02083 239 PRINTS Transforming protein P21 ras signature 27 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02083 Bva-Chr2 21547531 21548822 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02083 K07904 - gmx:100799439 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g02083 02 21547531 21548822 Bva02g02083 02 21547531 21548822 ECH