Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02080 ATGAACCAAGTGAAGCAAATCCATGCCTACACTCTCAGAAATTACATAGAGCACACCAAAACTCTCATTGAGAAGCTACTTGAAATCCCAGACCTCCAGTATGCTCGTGCCCTCTTCAACCTTTCACCCAACAGAGGCGTGTTCCTCTACAACAAGCTTATTCAAGCCTACTCTGCCCATGGACAACAACACCAATGCATTTCCCTTTACTCCCAGATGCGTCTTCAGGGTTGCCCACCAAACGAATACACTTTCAACTTCCTCTTTTCAGCATGtacctctctttcttctccttccctTGGACGAATGCTCCATACCCATTTTGTTAAATCTGGTTTTAAAGTTAACGTTTTTGCCTCCACGGCTTTAGTCGATATGTATGCTAAAGTGGGTATGTTGGAGTTTGCACGGCAGCTGTTTGATGAAATGGTTGTGCGAGCGACACCCACATGGAATGCTATGATTGCAGGCTATGCCAGGTTTGGGGATATGGAGGCAGCATTGTATTTGTTCACGTCAATGCCTTCTAGGAATGTGATTTCATGGACGGCCATGCTGTCTGGTTACTCGCAAAACAAACAATATGAAAATGCTTTGGAATGGTTTGTGAGGatggaaaaggagaaaggCATAAAGCCTAATGAAGTAACAGTAGCAAGTGTTTTACCAGCTTGTGCGAATCTTGGGGCACTGGAGATTGGTCAGAGGATTGAGGCATATGCAAGACATAATGGgttctttaaaaatttgtatgtGAGCAATGCTGTAATGGAAATGTATGCAAGGTGTGGCAAGATTGATATTGCTTGGCGGGTGTTCGATGAGATTGGTAACTTGAGAAACTCGTGCTCTTGGAATTCAATGATCATGGGTTTGGCCGTCCATGGACAATGTGCTAAGGCTCTTGAACTTTATGATCAAATGCTGGGAGAAGGAGCAAAACCTGATGATGTGACATTTGTGGGACTCCTCTTAGCATGCACCCATGGTGGCATGGTTGTAAAAGGCAGGCAAATCTTCTACtccatgaaaacaaaattccatATTGTTCCCAAACTAGAACACTACGGATGCATGGCAGATCTCCTAGGCCGTGCTGGGCAACTAACAGAGGCTTACGAAGTCATACGAAGTATGCCCATGAAACCTGACTCAGTAGTTTGGGGTGCGCTTTTGGGGGCTTGCAGTTTCCATGGTAATGTGAAGTTGGCCGAGATAGCCGCCGAGTCACTATTTGTTCTCGAACCTTATAACCCAGGGAACTATGTGATTCTCTCCAACATTTATGCCTCGGCTGGACAATGGGATGGAGTTGCAAAGCTCAGGAAGGTGATGAAGGGAGGCCGAATTACAAAGGCAGCTGGGTATAGTTTTATTGAAGAGGGAGGCCAACTTCATAAGTTTATCGTAGAGGATAGATCACATCCTAAATCCAATGAATTATTTGCTTTACTAGATAGAATTTATGAAGAATTAAAGCTTAAAGATAGTGCAACTAATCGCCATTTGGAACTTGATTTGTA 1523 0.4196 MNQVKQIHAYTLRNYIEHTKTLIEKLLEIPDLQYARALFNLSPNRGVFLYNKLIQAYSAHGQQHQCISLYSQMRLQGCPPNEYTFNFLFSACTSLSSPSLGRMLHTHFVKSGFKVNVFASTALVDMYAKVGMLEFARQLFDEMVVRATPTWNAMIAGYARFGDMEAALYLFTSMPSRNVISWTAMLSGYSQNKQYENALEWFVRMEKEKGIKPNEVTVASVLPACANLGALEIGQRIEAYARHNGFFKNLYVSNAVMEMYARCGKIDIAWRVFDEIGNLRNSCSWNSMIMGLAVHGQCAKALELYDQMLGEGAKPDDVTFVGLLLACTHGGMVVKGRQIFYSMKTKFHIVPKLEHYGCMADLLGRAGQLTEAYEVIRSMPMKPDSVVWGALLGACSFHGNVKLAEIAAESLFVLEPYNPGNYVILSNIYASAGQWDGVAKLRKVMKGGRITKAAGYSFIEEGGQLHKFIVEDRSHPKSNELFALLDRIYEELKLKDSATNRHLELDL 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02080 507 Gene3D Tetratricopeptide repeat domain 231 330 IPR011990 GO:0005515
Bva02g02080 507 Gene3D Tetratricopeptide repeat domain 6 96 IPR011990 GO:0005515
Bva02g02080 507 Gene3D Tetratricopeptide repeat domain 331 413 IPR011990 GO:0005515
Bva02g02080 507 Gene3D Tetratricopeptide repeat domain 148 230 IPR011990 GO:0005515
Bva02g02080 507 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 2 460 - -
Bva02g02080 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 177 IPR002885 -
Bva02g02080 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 213 IPR002885 -
Bva02g02080 507 PANTHER OS06G0125600 PROTEIN 2 460 - -
Bva02g02080 507 Gene3D Tetratricopeptide repeat domain 97 147 IPR011990 GO:0005515
Bva02g02080 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 46 80 IPR002885 -
Bva02g02080 507 Pfam E motif 398 460 IPR046848 -
Bva02g02080 507 Pfam PPR repeat 355 380 IPR002885 -
Bva02g02080 507 Pfam PPR repeat 254 276 IPR002885 -
Bva02g02080 507 Pfam PPR repeat 121 144 IPR002885 -
Bva02g02080 507 Pfam PPR repeat family 177 226 IPR002885 -
Bva02g02080 507 Pfam PPR repeat family 46 92 IPR002885 -
Bva02g02080 507 Pfam PPR repeat family 281 327 IPR002885 -
Bva02g02080 507 TIGRFAM PPR: pentatricopeptide repeat domain 180 215 IPR002885 -
Bva02g02080 507 TIGRFAM PPR: pentatricopeptide repeat domain 49 82 IPR002885 -
Bva02g02080 507 TIGRFAM PPR: pentatricopeptide repeat domain 150 179 IPR002885 -
Bva02g02080 507 TIGRFAM PPR: pentatricopeptide repeat domain 121 144 IPR002885 -
Bva02g02080 507 TIGRFAM PPR: pentatricopeptide repeat domain 284 316 IPR002885 -
Bva02g02080 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Bva02g02080 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 146 IPR002885 -
Bva02g02080 507 SUPERFAMILY TPR-like 21 440 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02080 Bva-Chr2 21535658 21537613 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02080 5 493 Glycoside Hydrolase AT3G49170 34.608 3.26e-95 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02080 - - vra:106780347 806.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g02080 02 21535658 21537613 Bva02g02080 02 21535658 21537613 ECH