Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02020 ATGGATAAACTGGCTCCAATTCACTATCTTATTCCTCGCTCTCTTCAGAAGTCACAATCCCACCAGCCACCAAGAAGCCAATCACCCACTTCGATTCCTCTTGGAATGATAGTCAGGGAATTGCATGCCAAGATGCTCAAAATGCCAAAAAAGGGGAACTTGGGTACCTTGGACGGAAGCATGATCAGATACTACTTGGAATTTGGGGATTTTATGTCAGCAACAAGAGTATTCTTCGGTGGTTTTGCAAGGAATTATATTCTCTGGAATTCGTTTCTCGAGgaatttttgagttttggaGGCGACCCACATGAGATTCTGGCGGTCTTCAAGGAATTGCATCAAATTGGAATGCAGTTCAATAGTAGTGCTCTTACAATTGTTCTGAAAATTTGCTCAATTTTAATGGACGATTGGCTCGGGTTGGAAATTCATGCTTGTATGATCAAGAGAGGCTTCGATTTCGATGTGCATTTGAATTGTGCATTAATCAATTTCTATAGCAAATGCTGGGTCCTAGATAGAGCAAACCAGGTGTTTGATGAGACGCCACACCGAGAAAATTTCTTGTGGAATACAATTACTATAGTGAATTTGAGAAGTGAGAGGTGGGTGAACTCTTTGGAGCTGTTCCATAAAATGCAGCTAGCTTCCGCTAAAGCCACTACTGCTACCATTGTGAAGATACTGCAAGCTTGTGGAAAATTAAGAGCTCTCAATGAAGGGAAGCAGATTCATGGGTATGTTTTAAGATGTGCACTTGAATCAGAATTGTCAATTTGCAATGCCATAATCAGCATGTACTCTAGAAACAATAAGCTCAAACTAGCTAGAGCAGTTTTTGATTCAATGGAAGATCGTGATTTGTCTTCATGGAACTCAATAATTTCGAGTTATGCAGTGGCTGGTTATTTGAATGATTGCTGGGATCTCTTCCAAGAAATGGAGTCTTCCAATGTTAAACCAGACATTATAACATGGAATATTCTTATTTCAGGCCACCTTCTTCTTGACTCTTATGAAACAGTCCTTACCATTTTCCAGAGACTACAAAGTGCCGGCTTCAGACCAGACTCCTGCTCCGTAACTAGTGCTTTACAAGCAATTATTGAATTAGGTTTCTTTAAACTGGGGAAAGTAATCCATGGTTACATTATAAGAAATAAGCTTGACAACGATGTCTATGTGAATACTTCATTGGTGGATATGTATGTCAAGAATGATTGCTTAGAAAAAGCTCAAGCAGTGTTTGACaatacaaaaaacaaaaatgtttgTACTTGGAATTCATTGATATCTGGGCATTGCATCAAGGGCTTATTTGATGACGCTGAAGCTTTATTGACGCAGATGGAGGAGGAAGGGATAAAACCTGATTTGGTGACATGGAACGGTTTGGTTTCAGGGTATTCAATGTGGGGACGTTATGAAGATGCTTTGGCTGTGATGCGTCGCATAAGGAGTTCAAGATTAACTCCTAATGTGGTTTCCTGGACTGCTATGATATCAGGTGCTTCACAGAATGAAAACTATAGGGATGCCCTCAAGTTTTTCATCCAAATGCAAGAAGAAGATGTCAAACCAAACGCTACTACCATTTGCTGCTTGCTTCGTGCCTGTGCTGGCTTATCATTGTTGAAGAAAGGGGAAGAGATACACTGCCTTAGTTTAAGACTTGGTTTTGTGGATGATATATACATAGCCACAACCCTTATTGATATGTACTGGTTTCCTGATTCccattg 1745 0.3931 MDKLAPIHYLIPRSLQKSQSHQPPRSQSPTSIPLGMIVRELHAKMLKMPKKGNLGTLDGSMIRYYLEFGDFMSATRVFFGGFARNYILWNSFLEEFLSFGGDPHEILAVFKELHQIGMQFNSSALTIVLKICSILMDDWLGLEIHACMIKRGFDFDVHLNCALINFYSKCWVLDRANQVFDETPHRENFLWNTITIVNLRSERWVNSLELFHKMQLASAKATTATIVKILQACGKLRALNEGKQIHGYVLRCALESELSICNAIISMYSRNNKLKLARAVFDSMEDRDLSSWNSIISSYAVAGYLNDCWDLFQEMESSNVKPDIITWNILISGHLLLDSYETVLTIFQRLQSAGFRPDSCSVTSALQAIIELGFFKLGKVIHGYIIRNKLDNDVYVNTSLVDMYVKNDCLEKAQAVFDNTKNKNVCTWNSLISGHCIKGLFDDAEALLTQMEEEGIKPDLVTWNGLVSGYSMWGRYEDALAVMRRIRSSRLTPNVVSWTAMISGASQNENYRDALKFFIQMQEEDVKPNATTICCLLRACAGLSLLKKGEEIHCLSLRLGFVDDIYIATTLIDMYWFPDSH 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02020 581 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 494 528 IPR002885 -
Bva02g02020 581 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 424 458 IPR002885 -
Bva02g02020 581 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Bva02g02020 581 PANTHER OS05G0586900 PROTEIN 102 183 - -
Bva02g02020 581 PANTHER OS05G0586900 PROTEIN 185 575 - -
Bva02g02020 581 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 102 183 - -
Bva02g02020 581 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 185 575 - -
Bva02g02020 581 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 459 493 IPR002885 -
Bva02g02020 581 TIGRFAM PPR: pentatricopeptide repeat domain 461 495 IPR002885 -
Bva02g02020 581 TIGRFAM PPR: pentatricopeptide repeat domain 496 530 IPR002885 -
Bva02g02020 581 TIGRFAM PPR: pentatricopeptide repeat domain 260 289 IPR002885 -
Bva02g02020 581 TIGRFAM PPR: pentatricopeptide repeat domain 426 459 IPR002885 -
Bva02g02020 581 TIGRFAM PPR: pentatricopeptide repeat domain 291 324 IPR002885 -
Bva02g02020 581 TIGRFAM PPR: pentatricopeptide repeat domain 325 359 IPR002885 -
Bva02g02020 581 Gene3D Tetratricopeptide repeat domain 365 487 IPR011990 GO:0005515
Bva02g02020 581 Gene3D Tetratricopeptide repeat domain 488 577 IPR011990 GO:0005515
Bva02g02020 581 Gene3D Tetratricopeptide repeat domain 199 353 IPR011990 GO:0005515
Bva02g02020 581 Gene3D Tetratricopeptide repeat domain 95 198 IPR011990 GO:0005515
Bva02g02020 581 Pfam PPR repeat family 288 333 IPR002885 -
Bva02g02020 581 Pfam PPR repeat family 423 470 IPR002885 -
Bva02g02020 581 Pfam PPR repeat family 493 541 IPR002885 -
Bva02g02020 581 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02020 Bva-Chr2 21197089 21200518 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02020 100 575 Glycoside Hydrolase AT3G49170 22.605 1.10e-27 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02020 - - gmx:100796795 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g02020 02 21197089 21200518 Bva02g02020 02 21197089 21200518 ECH