Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g02006 ATGACTGCAAATGGTGGCACAGGAACTGAAGAACACAAGAGGAAAGCTAATGGTTGTAATCTCAATCCTGGGTGGCAACAGAGTATGTTAAGGTCACCTAGAATGAGAGTGTCTGTGAAGAAGGATTGGCCAATTGAAAATGCAACTAGTGATGAAGAGGATAAGAATTTGACTAggtatctttcttctttagcTGGATCTGGACCGCCTAGTACTAGTTTTTGTTCCACGACAGATACTGAGCTCACTGCTGGAGAGTTAAATGTTAGAAATTATAAGAACCCCAATTTGACTTTGGTTAGCCATCTACATGGTTCCAAACAGTGTCTAAGGGATAAAacagaaaaccaaaaacaagtACCATTCAGGGTAAGCAAGGAAGCTAAGGGAATCGATTCTGATTTTTTGAGCCTGAAGTCTTCGTTCACCAAGAAAATCACAGCAAATACAACTGATAAGGACAAGACAATCGACTCAACTAATGCACTTGTTGTTGGTAGAAAGAAGAACAGTTTATCCACATATAATTTTCCACAATTGAAGGGAAAAGGTGTTATCTGCAAAGATGATGATACTTGCATTGGGTTTGGAGAAGCAGTAATGAACCAAGAGGGTGAAACTCCTACTCCTGTGACTAATTTTCATTCTGATACACTGTTGAGGTCAGATGCTGATGATAATAAGCCTTGTTTGCAAAGACTTGTCAAGTCTAGCACAGAATCCTTTGATGATGGGATCAACTTGAGAGAGTGGCTCAAGCAAGCAAATCATAAGATAGATAAAACTGAAAGCTTACACATATTTAAGCAGGTCCTGGAATTTGCTGATTCTGCACACTCCCAAGGAATTGTCCTGCAAGACTTTGGACcatcatgttttattttattcccttCCGGTAAAGTTAATTACATTGGCTCGCCTGGGCAAGGAGAAGTGAATGTTATGAGCTGCAATGTGACTAAGAAAAGGCCTCTGGAACAGGATATGTGCGCTTCTTGTAGTTTGGGAGAAAAGCAGCCAAAGCTTTGCCCGGAGACTAGCTCTCTCAGGCAACACCATCACTTCAGCAATAATCATGGACACAAGaccagaaaattaaatcacgaTTCTTGCACAAATGGGTCCATTGGCATTGATTCTATTAATATGGGAAATGAGTGTGAAAACAGTTTCAGCTGCCAACATATTTTTACTGGAGAAAAGCAGTCTGTGTCTGATATTTTCCAGCTGGAAAAGAAGTGGTATTCAAGTCCGGAAGAGCTTAGTGATGGAAGCTGCAcattttcatcaaatatttaCAGCCTTGGAGTTCTTCTTTTTGAGTTACTGTGCAATATTGATATATGGGAGAAACGTTCAGCAGCAATGTCGGATTTGCGTTATCGAATCTTACCACCAAGGTTTCTGTCAGAGCACCCAAAGGAAGCTGGATTTTGTCTTTGGCTTCTGCATCCAGAACCTTCTTCTCGTCCCAATACTAGGATGACTTTACAGTCTGAATTAATATTCGAGTTAGAGGAATTACATTCTGGAGATGACGTCTTAGCTTCACCATCATCAGATGCTGAGACGGATGGATTACTGAGCTTTTTAGTTTTActggaagaagaaaagcaaaaacagaTAGCTAAATTAAGTGAAGAGATAAGTTGCTTGGATGGAGATATTAAGGAGGTTGAAAGAAGGTATTCATTTGGTGGAGCGTCATTGGAAAAGCATTTCCCTGAATTGAGGATAAACAGATTCAATTTTCAAGACCCTTTCAGTTCAGATACTTGGGAACCAATTTCAAGAACAAGTGTTAATGAAGCCATGTTGATGAGAAATATCAATCAGCTACAGGAAGCTTACTTTTCAATGAGATCCCAAATATTGTTTAGAGAAACTGCAACTGTTGCACGACATGATCAAGATGTGCTAAAAAATAGAGGGAGATTATCTTCTCATTTACAGAACAATAACGAGGTGCCAAGAAGAAGTCAGAAATATGCTGATTGTCTTGGATCCTTCTTTGAAGGTTTATGCAAGTTTGTTCGTTATAGCAAGTTTGAAGAACGTGGAACATTAAGAAATAGAGATCTGCTCAATTCCGCCAATGTGATATGTGCTTTAAGTTTTGACCGTGATGAGGACTACATTGCAGCAGCTGGAGTTTCAAAGAGAATCAAGATTTTTGACTTCAGTGCTATTTTAAGTGATTCTGTTGACATCCACTACCCTATAGTTGAGATGTCAAACAAATCAAACCTTAGCTGTGTCTGCTGGAATAGCTACATGAGGAACCATCTGGCATCTACAGACTATGATGGTGTCGTTCAGATGTGGGATGCAAGCACTGGCCAACCATTTTCTCAATACACGGAGCATCAGAAGAGAGCATGGTCTGTTCACTTCTCTCATTCTGACCCGAAATTGTTTGCTAGTGGAAGTGATGACTCTTCTGTCAAACTCTGGAACATCAACGAGAAAAGTTCTCTCGGCACTATTTGGAACCCTGCCAACGTATGCTGTGTTCAGTTCTCTCCTTACTCAACAAACCTTCTATTTTTCGGATCAGCTGATTACAAGATCAATGGTTATGATCTTCGGCACACTAGAATCCCTTGGTGCACACTAGCTGGTCATGGCAAATCCGTTAGCTATGTGAAATTTGTAGATGCTGAAACACTTGCCTCAGCTTCCACCGACAACACTTTGAAGCTCTGGGACCTGAAGAAAACCATCTCTTCTGGGTTGTCATCAAGTGCTTGTGACTTAACCTTCAAAGGCCACAGAAACGAAAAGAATTTTGTGGGCTTAACAGCTATGGATGGATACATTGCATGCGGTTCAGAAACTAACGAGGTATACTGTTATCACAGATCTCTGCCAGTGCCAATCACCGCGCACAAATTTGGTTCTGTTGATCCCATTTCTGGGCGTgcaaataatgatgataatgGACAGTTTGTTTCTAGTGTCTGCTGGAGAGAGAAGACTAACATGCTGGTTGCCGCCAATTCAATTGGAGTTGTAAAACTACTGCAGATGGTTTG 3035 0.3914 MTANGGTGTEEHKRKANGCNLNPGWQQSMLRSPRMRVSVKKDWPIENATSDEEDKNLTRYLSSLAGSGPPSTSFCSTTDTELTAGELNVRNYKNPNLTLVSHLHGSKQCLRDKTENQKQVPFRVSKEAKGIDSDFLSLKSSFTKKITANTTDKDKTIDSTNALVVGRKKNSLSTYNFPQLKGKGVICKDDDTCIGFGEAVMNQEGETPTPVTNFHSDTLLRSDADDNKPCLQRLVKSSTESFDDGINLREWLKQANHKIDKTESLHIFKQVLEFADSAHSQGIVLQDFGPSCFILFPSGKVNYIGSPGQGEVNVMSCNVTKKRPLEQDMCASCSLGEKQPKLCPETSSLRQHHHFSNNHGHKTRKLNHDSCTNGSIGIDSINMGNECENSFSCQHIFTGEKQSVSDIFQLEKKWYSSPEELSDGSCTFSSNIYSLGVLLFELLCNIDIWEKRSAAMSDLRYRILPPRFLSEHPKEAGFCLWLLHPEPSSRPNTRMTLQSELIFELEELHSGDDVLASPSSDAETDGLLSFLVLLEEEKQKQIAKLSEEISCLDGDIKEVERRYSFGGASLEKHFPELRINRFNFQDPFSSDTWEPISRTSVNEAMLMRNINQLQEAYFSMRSQILFRETATVARHDQDVLKNRGRLSSHLQNNNEVPRRSQKYADCLGSFFEGLCKFVRYSKFEERGTLRNRDLLNSANVICALSFDRDEDYIAAAGVSKRIKIFDFSAILSDSVDIHYPIVEMSNKSNLSCVCWNSYMRNHLASTDYDGVVQMWDASTGQPFSQYTEHQKRAWSVHFSHSDPKLFASGSDDSSVKLWNINEKSSLGTIWNPANVCCVQFSPYSTNLLFFGSADYKINGYDLRHTRIPWCTLAGHGKSVSYVKFVDAETLASASTDNTLKLWDLKKTISSGLSSSACDLTFKGHRNEKNFVGLTAMDGYIACGSETNEVYCYHRSLPVPITAHKFGSVDPISGRANNDDNGQFVSSVCWREKTNMLVAANSIGVVKLLQMV 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g02006 1011 Coils Coil 535 562 - -
Bva02g02006 1011 Pfam WD domain, G-beta repeat 871 903 IPR001680 GO:0005515
Bva02g02006 1011 Pfam WD domain, G-beta repeat 780 819 IPR001680 GO:0005515
Bva02g02006 1011 ProSitePatterns Trp-Asp (WD) repeats signature. 890 904 IPR019775 -
Bva02g02006 1011 MobiDBLite consensus disorder prediction 1 33 - -
Bva02g02006 1011 Gene3D - 670 1011 IPR015943 GO:0005515
Bva02g02006 1011 ProSiteProfiles Trp-Asp (WD) repeats profile. 786 828 IPR001680 GO:0005515
Bva02g02006 1011 SUPERFAMILY WD40 repeat-like 699 1007 IPR036322 GO:0005515
Bva02g02006 1011 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 786 821 - -
Bva02g02006 1011 PANTHER LIGASE COP1, PUTATIVE-RELATED 2 1011 - -
Bva02g02006 1011 ProSiteProfiles Trp-Asp (WD) repeats profile. 872 905 IPR001680 GO:0005515
Bva02g02006 1011 Gene3D Transferase(Phosphotransferase) domain 1 244 503 - -
Bva02g02006 1011 PRINTS G protein beta WD-40 repeat signature 763 777 IPR020472 -
Bva02g02006 1011 PRINTS G protein beta WD-40 repeat signature 806 820 IPR020472 -
Bva02g02006 1011 PRINTS G protein beta WD-40 repeat signature 890 904 IPR020472 -
Bva02g02006 1011 PANTHER PROTEIN SPA1-RELATED 2 2 1011 IPR044630 GO:0009640
Bva02g02006 1011 ProSitePatterns Trp-Asp (WD) repeats signature. 763 777 IPR019775 -
Bva02g02006 1011 SUPERFAMILY Protein kinase-like (PK-like) 245 498 IPR011009 -
Bva02g02006 1011 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 872 905 - -
Bva02g02006 1011 SMART WD40_4 822 861 IPR001680 GO:0005515
Bva02g02006 1011 SMART WD40_4 865 903 IPR001680 GO:0005515
Bva02g02006 1011 SMART WD40_4 691 726 IPR001680 GO:0005515
Bva02g02006 1011 SMART WD40_4 779 819 IPR001680 GO:0005515
Bva02g02006 1011 SMART WD40_4 737 776 IPR001680 GO:0005515
Bva02g02006 1011 SMART WD40_4 914 953 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g02006 Bva-Chr2 21106363 21111304 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g02006 783 952 Miscellaneous Gene Families AT5G08390 25.581 3.38e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g02006 K16240 - gmx:100799267 1186.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g02006 02 21106363 21111304 Bva02g02006 02 21106363 21111304 ECH