Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01924 ATGCTCTGCAACTTCAATTACCTCTCGTCTTCACTTCTATCTGGCAATTTGAAACGGCTCTTACCTCTCCCACAAACCCCTTATTCAATTCTCTTTCAATACTACAGCATTGCTTCATATCAAGCCCATCCATGGGGTCAAGCAAACAAAGCTCTCTTTTTGAGCCGACTCAGAGCTTTGGTACCAGTTCCTGATCCATCCTACCTCAGGGAACCCGAAGTAGTACTTTTGTTTTGCTCCAATGCCCTCAAAGCCTCTGCCAAAAAGGGATTTCTTCCTGAAGGAAAGCAATTACATGCACATTTGATAAAGTTGGGATTGTACAATGTGTTGTCTTTGCAAAACCAGATGTTAAGTGTTTATCTTAAATGTAAGGAAACTGACGATGCAGAGAAACTGTTCGAAGAATTTCGTGACAGAAATATAGTGTCATGGAATATTGTGATTCGTGGTAGTAACTATGGCTTGTATGCTTATCTgggtttttcttattttagaaGGATGATGTTAGAGATGGTGGTTCCAGATGATATTACATTTAATAGCTTGATTTGCTTGTGCATTCATTTGAATGATATAGATATGGGCAGACAATTGCATTCTTTCTTAGTGAAGTTGGGATTTGATATGGATTGTTTTGTTGCCAGCGCTCTTGTTGATTTATATGCAAAATGTGGGTTAATTGAGGATGCAAGAGGGGTTTTCAATTGTGTGCTGTATATAGACATGGTTATGTGGAATGTGATGATTTCCTGCTATGCTTTGAATTGTTTACCAGGAGAGACTTGTACCTTATTCAACTTGATGCGATTAGAAGGTGTGAATGGGGACGAGTTCACGTTTAGTAGCCTTCTCAGTTCATGTGGCACTTCcaaatattatgaatttgGAAAGCAGGTTCATGGTCTTATTCTTAGACAGTCATTTGATTCAGATGTTTTAGTGGCCAGTGCACTCCTCAACATGTatacaaagaatgaaaatgtaaCTGATGCGCATATGGTTTTTGAGAAGATGGCAATTCGAAATGTTGTGTCCTGGAACACTATAATAGTCGGCCATGGTAAGTGTGGAGGCGGGAATGAGGTTATGGAACTTCTCAGAAACATGCTTTCTCAAGAAATATATCCTGATGAATTGACTCTTTCTAGCATTCTTAGTTCCTGTGGCTACACATCTACCACCAGTGAAACCATGCAAGCCCATGCTTGCACCATTAAGCTTGGatttcaagaatttttatcTGTTGCCAATGCTTTGATAAGTGCATACTCTAAGTGTGGTAGCATTGCCAATGCATCTCAATGTTTCAGCTTAATTGTAGAACCAGATCTCATTACTTGGACTTCAATGATAAATGCATATGCATTCCATGGTCTTGCTAGAGAAGCAACTGAGATGTTTGAAAAGATGCTATCTTGTGGCATAATACCAGATCAAGTTTCCTTTCTCTGTGTTCTCTCTGCTTGTGCCCATGGTGGGCTCGTAAATATGGGGCTTCATTACTTTAAATTAATGACCCATATCTATCACATTGCACCTGATTCAGAGCATTATGCTTGCCTCATTGACCTTCTTGGACGATGTGGTCTTATATCAGAGGCTTTTGAATTATTGATGGCCATGCCAATTGAACCTGATTCCAACACCTTAGGGGCTTTCATTGGATCTTGCAAACTTCATGCAAATATGGGACTGGCTAAATGGGTTGCAGAAAAGCTCTTCAAGATAGAGCCAAAGAAGACTGTAAATTATACAGTAATGTCTCATATTTATGCTTCTCAGAGACACTGGTCAGACGCGGCTAGAGTACGCGCAATGATAGGGGAATGTTGCAATAGAAAAGTCCCAGGTTATAGCTGGATAGAGATTGCTGATCTAGTTCATTCATTTGTATCCAGTGATAAATCCCATCCTCAATCTCCTGAAATTCATGCTACTTTAAAATCGCTACTGGAGCCaatgaaggaagaaattgTATG 1982 0.3855 MLCNFNYLSSSLLSGNLKRLLPLPQTPYSILFQYYSIASYQAHPWGQANKALFLSRLRALVPVPDPSYLREPEVVLLFCSNALKASAKKGFLPEGKQLHAHLIKLGLYNVLSLQNQMLSVYLKCKETDDAEKLFEEFRDRNIVSWNIVIRGSNYGLYAYLGFSYFRRMMLEMVVPDDITFNSLICLCIHLNDIDMGRQLHSFLVKLGFDMDCFVASALVDLYAKCGLIEDARGVFNCVLYIDMVMWNVMISCYALNCLPGETCTLFNLMRLEGVNGDEFTFSSLLSSCGTSKYYEFGKQVHGLILRQSFDSDVLVASALLNMYTKNENVTDAHMVFEKMAIRNVVSWNTIIVGHGKCGGGNEVMELLRNMLSQEIYPDELTLSSILSSCGYTSTTSETMQAHACTIKLGFQEFLSVANALISAYSKCGSIANASQCFSLIVEPDLITWTSMINAYAFHGLAREATEMFEKMLSCGIIPDQVSFLCVLSACAHGGLVNMGLHYFKLMTHIYHIAPDSEHYACLIDLLGRCGLISEAFELLMAMPIEPDSNTLGAFIGSCKLHANMGLAKWVAEKLFKIEPKKTVNYTVMSHIYASQRHWSDAARVRAMIGECCNRKVPGYSWIEIADLVHSFVSSDKSHPQSPEIHATLKSLLEPMKEEIV 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01924 660 PANTHER OS07G0259400 PROTEIN 67 643 - -
Bva02g01924 660 PANTHER OS07G0578800 PROTEIN-RELATED 67 643 IPR045215 GO:0003723|GO:0009451
Bva02g01924 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 444 478 IPR002885 -
Bva02g01924 660 Pfam E+ motif 628 652 IPR046849 -
Bva02g01924 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Bva02g01924 660 Gene3D Tetratricopeptide repeat domain 414 641 IPR011990 GO:0005515
Bva02g01924 660 Gene3D Tetratricopeptide repeat domain 158 295 IPR011990 GO:0005515
Bva02g01924 660 Gene3D Tetratricopeptide repeat domain 72 154 IPR011990 GO:0005515
Bva02g01924 660 TIGRFAM PPR: pentatricopeptide repeat domain 244 277 IPR002885 -
Bva02g01924 660 TIGRFAM PPR: pentatricopeptide repeat domain 345 379 IPR002885 -
Bva02g01924 660 TIGRFAM PPR: pentatricopeptide repeat domain 446 479 IPR002885 -
Bva02g01924 660 TIGRFAM PPR: pentatricopeptide repeat domain 115 143 IPR002885 -
Bva02g01924 660 Pfam PPR repeat 244 274 IPR002885 -
Bva02g01924 660 Pfam PPR repeat 519 542 IPR002885 -
Bva02g01924 660 Pfam PPR repeat 115 142 IPR002885 -
Bva02g01924 660 Pfam PPR repeat 216 236 IPR002885 -
Bva02g01924 660 Pfam PPR repeat 418 440 IPR002885 -
Bva02g01924 660 Pfam PPR repeat 317 340 IPR002885 -
Bva02g01924 660 Pfam E motif 561 623 IPR046848 -
Bva02g01924 660 Gene3D Tetratricopeptide repeat domain 298 406 IPR011990 GO:0005515
Bva02g01924 660 Pfam PPR repeat family 342 389 IPR002885 -
Bva02g01924 660 Pfam PPR repeat family 443 491 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01924 Bva-Chr2 20703906 20705888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01924 78 657 Glycoside Hydrolase AT3G49170 32.373 1.84e-107 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01924 - - gmx:100778378 849.736