Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01625 ATGTTCCTCTTACTCACTCATTCTTCCACCCTCCTCTTCACCCTTCTCCTTCTCACTTCACTTCCATGCATTCTTTCAAGAACACTCACATTCTCTCCGGTCACCAAAATATCTCTCACAAACCATAACATCCAACGCCTGGCCGATGCCGGAAAAGGCAGCACCATCACTGGCATATCAGAAATCAAAAAGTACTTCTCTCATTTTGGCTACATTAACATCTCATTGCATAACAACAGTACTTTCTCCGACATCTTTGACGCAGAGTTCGAATCAGTTCTTAACCTATACCAGCAGAAGCTTGGCCTCCAAGTAACCGGCAAGCTCGATTCCAACACACTTTCTCATATCACCACACCCAGATGCGGCGTACCAGATACAATCAATGTTGATTCTTTCCATTCAACCGAACATTACCTTTATTTTCCGGGAAAACCTCGTTGGACACGCCCCATGCCAATGTCACTCACCTACTCATTCTCTCGAGATTACATGATACGTAGCTTGAGCTTGCATGAAATAAGGGAAGCCTTTAAACGTGCATTTTCCCGGTGGGCTTCAGTTATTCCAGTTAGTTTTGTCGAAACAGATGATTATAGCTTCGCTGACATCAAAATAGGGTTTTACAATGGTGACCATGGAGATGGGGAACCATTTGATGGGGTGCTTGGCGTGTTGGCCCATTCGTTTTCACCGGAGAGCGGGAGGCTCCACCTTGACGCAGCGGAGACATGGGCGGTGGATTTTGGGTCGGAGAAGTCGGATGTGGCGGTGGATTTGGAGTCGGTGGCGACACATGAGATTGGACATCTGTTAGGGTTGTCTCATAGTTCGGTGAAAGAGGCAGTGATGTATCCTAGTCTTAAAGCGAGAGATAAGAGAGCTGATTTGAAGATGGATGACATAAAGGGAGTGCAAGCTTTGTATGgatcaaatccaaattttaGATTTGGGTCATCGTTAGAATCTGATATTTCCACTAATGGTGCAGATTTAAGAGTGAGATCTTTGAGGTTGGCCGGCAtcattctcttttccttcattcAAAGTTTATGTCTATGcatata 1067 0.4367 MFLLLTHSSTLLFTLLLLTSLPCILSRTLTFSPVTKISLTNHNIQRLADAGKGSTITGISEIKKYFSHFGYINISLHNNSTFSDIFDAEFESVLNLYQQKLGLQVTGKLDSNTLSHITTPRCGVPDTINVDSFHSTEHYLYFPGKPRWTRPMPMSLTYSFSRDYMIRSLSLHEIREAFKRAFSRWASVIPVSFVETDDYSFADIKIGFYNGDHGDGEPFDGVLGVLAHSFSPESGRLHLDAAETWAVDFGSEKSDVAVDLESVATHEIGHLLGLSHSSVKEAVMYPSLKARDKRADLKMDDIKGVQALYGSNPNFRFGSSLESDISTNGADLRVRSLRLAGIILFSFIQSLCLCI 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01625 355 CDD ZnMc_MMP 156 310 IPR033739 GO:0008237|GO:0008270
Bva02g01625 355 PANTHER METALLOENDOPROTEINASE 4-MMP 32 350 - -
Bva02g01625 355 Pfam Putative peptidoglycan binding domain 59 115 IPR002477 -
Bva02g01625 355 Pfam Matrixin 155 310 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Bva02g01625 355 PRINTS Matrixin signature 202 230 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bva02g01625 355 PRINTS Matrixin signature 263 288 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bva02g01625 355 PRINTS Matrixin signature 178 193 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bva02g01625 355 PRINTS Matrixin signature 297 310 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bva02g01625 355 PRINTS Matrixin signature 117 130 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bva02g01625 355 SUPERFAMILY PGBD-like 52 127 IPR036365 -
Bva02g01625 355 Gene3D Collagenase (Catalytic Domain) 51 315 IPR024079 GO:0008237
Bva02g01625 355 SMART col_5 144 311 IPR006026 GO:0006508|GO:0008237|GO:0008270
Bva02g01625 355 PANTHER MATRIX METALLOPROTEINASE 32 350 - -
Bva02g01625 355 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 140 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01625 Bva-Chr2 18967826 18969078 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01625 - K07999 gmx:100781237 438.728